Job Description P33221 Confidence 100.00% Date Wed Jan 25 15:20:50 GMT 2012 Rank 15 Aligned Residues 371 % Identity 16% Template c1m6vE_ PDB info PDB header:ligase Chain: E: PDB Molecule:carbamoyl phosphate synthetase large chain; PDBTitle: crystal structure of the g359f (small subunit) point mutant of2 carbamoyl phosphate synthetase Resolution 2.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.												.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.			.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.																											.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.																											.	.
Query Sequence		A	L	R	P	A	A	T	R	V	M	L	L	G	S	G	.	.	.	.	.	.	.	.	.	.	.	E	L	G	K	E	V	A	I	E	C	Q	R	L	G	V	E	V	I	A	V	D	R	Y	A	D	A	.	.	P	A	M	H	V	A	H	R	S	H	V	I	N	M	L	D	G	D	A	L	R	R	V	V	E	L
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.																											.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.																											.	.															.
Template Conservation																																																																						.
Template Sequence		P	K	R	T	D	I	K	S	I	L	I	L	G	A	G	P	I	V	I	G	Q	A	C	E	F	D	Y	S	G	A	Q	A	C	K	A	L	R	E	E	G	Y	R	V	I	N	V	N	S	N	P	A	T	I	M	T	D	P	E	M	A	D	A	T	Y	I	E	P	I	.	H	W	E	V	V	R	K	I	I	E	K
Template Known Secondary structure					S	S											S		B	T	T	B		T																T	T								S		S	S		G	G	G		G	G	G		S								.
Template Predicted Secondary structure																																																																						.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.		70	.	.	.	.	.	.	.	.	.	80
		74	.	.	.	.	.	80	.	.	.	.						.	.	.	.	.	90	.	.	.			.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.										.	.									.
Query SS confidence													.	.	.	.	.										.	.									.
Query Sequence		E	K	P	H	Y	I	V	P	E	I	E	.	.	.	.	.	A	I	A	T	D	M	L	I	Q	.	.	L	E	E	E	G	L	N	V	.	V	P	C	A	R	A	T	K	L	T	M	N	R	E	G	I	R	R	L	A	A	E	E	L	Q	L	P	T	S	T	Y	R	F	A	D	S	E	S	L	F	R	E	A	V
Query Conservation													.	.	.	.	.										.	.									.
Alig confidence													.	.	.	.	.										.	.									.																				.
Template Conservation																																																									.
Template Sequence		E	R	P	D	A	V	L	P	T	M	G	G	Q	T	A	L	N	C	A	L	E	L	E	R	Q	G	V	L	E	E	F	G	V	T	M	I	G	A	T	A	D	A	I	D	K	A	E	D	R	R	R	F	D	V	A	.	M	K	K	I	G	L	E	T	A	R	S	G	I	A	H	T	M	E	E	A	L	A	V	A
Template Known Secondary structure					S					S	S	S														T	T					T	T					S	S										S								.					T					S					S	S
Template Predicted Secondary structure																																																									.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.		.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		A	D	I	G	Y	P	C	I	V	K	P	V	M	S	S	S	G	K	G	Q	T	F	I	R	S	A	E	Q	L	A	Q	A	W	K	Y	A	Q	Q	G	G	R	A	G	A	G	R	V	I	V	E	G	V	V	K	F	D	F	E	I	T	L	L	T	V	S	A	V	D	G	V	H	F	C	A	P	V	G	H	R	.
Query Conservation																																																																																	.
Alig confidence																																													.	.																																			.
Template Conservation																																													.	.
Template Sequence		A	D	V	G	F	P	C	I	I	R	P	S	F	T	M	G	G	S	G	G	G	I	A	Y	N	R	E	E	F	E	E	I	C	A	R	G	L	D	L	S	P	T	K	.	.	E	L	L	I	D	E	S	L	I	G	W	K	E	Y	E	M	E	V	V	R	D	K	N	D	N	C	I	I	V	C	S	I	E	N	F
Template Known Secondary structure						S	S						T	T			T	T	T	T					S	S																T	T		.	.									T	T	S											T	T												S
Template Predicted Secondary structure																																													.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.			.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
						225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.		.	.	.	.	.	.	.	.	270	.			.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.																																						.											.	.
Query SS confidence		.	.	.	.																																						.											.	.
Query Sequence		.	.	.	.	Q	E	D	G	D	Y	R	E	S	W	Q	P	Q	Q	M	S	P	L	A	L	E	R	A	Q	E	I	A	R	K	V	V	L	A	L	G	G	Y	.	G	L	F	G	V	E	L	F	V	C	.	.	G	D	E	V	I	F	S	E	V	S	P	R	P	H	D	T	G	M	V	T	L	I	S	Q	D	L
Query Conservation		.	.	.	.																																						.											.	.
Alig confidence		.	.	.	.																																						.											.	.
Template Conservation
Template Sequence		D	A	M	G	I	H	T	G	D	S	I	T	V	A	P	A	Q	T	L	T	D	K	E	Y	Q	I	M	R	N	A	S	M	A	V	L	R	E	I	G	V	E	T	G	G	S	N	V	Q	F	A	V	N	P	K	N	G	R	L	I	V	I	E	M	N	P	R	V	S	R	S	S	A	L	A	S	K	A	T	G	F
Template Known Secondary structure		S		T	T	S		G	G	G	S					S			S																					T			S											T	T	T	T									S	S													S
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.			.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure																										.	.
Query SS confidence																										.	.
Query Sequence		S	E	F	A	L	H	V	R	A	F	L	G	L	P	V	G	G	I	R	Q	Y	G	P	A	.	.	A	S	A	V	I	L	P	Q	L	T	S	Q	N	V	T	F	D	N	V	Q	N	A	V	G	A	D	L	Q	I	R	L	F	G	K	P	E	I	D	G	S	R	R	L	G	V	A	L	A	T	A	E	S	V	V
Query Conservation																										.	.
Alig confidence																										.	.																													.	.	.	.	.
Template Conservation																																																								.	.	.	.	.
Template Sequence		P	I	A	K	V	A	A	K	L	A	V	G	Y	T	L	D	E	L	M	N	D	I	T	G	G	R	T	P	A	S	F	E	P	S	I	D	Y	V	V	T	K	I	P	R	F	N	F	E	K	F	A	G	A	N	.	.	.	.	.	D	R	L	T	T	Q	M	K	S	V	G	E	V	M	A	I	G	R	T	Q	Q
Template Known Secondary structure											T	T	T			G	G	G	S	B		G	G	G	T	T	S	S	B	S		S			B		S	S										G	G	G		T	T			.	.	.	.	.		B			S	S												S	S
Template Predicted Secondary structure																																																								.	.	.	.	.
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.						.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
		376	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	I	E	R	A	K	H	A	A	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	S	L	Q	K	A	L	R	G	L	E
Template Known Secondary structure									T	T	S
Template Predicted Secondary structure
Template SS confidence
		393	.	.	.	.	.	.	400	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions