Job Description P33221 Confidence 100.00% Date Wed Jan 25 15:20:50 GMT 2012 Rank 36 Aligned Residues 283 % Identity 16% Template c1ehiB_ PDB info PDB header:ligase Chain: B: PDB Molecule:d-alanine:d-lactate ligase; PDBTitle: d-alanine:d-lactate ligase (lmddl2) of vancomycin-resistant2 leuconostoc mesenteroides Resolution 2.38 Å

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		13	.	.	.	.	.	.	20	.										.	.	.	.	.	.	.	.	30	.	.	.	.	.		.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.															.																																							.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.															.																																							.	.	.	.	.	.	.	.	.
Query Sequence		T	R	V	M	L	L	G	S	G	.	.	.	.	.	.	.	.	.	E	L	G	K	E	V	A	I	E	C	Q	R	L	G	.	V	E	V	I	A	V	D	R	Y	A	D	A	P	A	M	H	V	A	H	R	S	H	V	I	N	M	L	D	G	D	A	L	R	R	V	V	E	L	.	.	.	.	.	.	.	.	.
Query Conservation											.	.	.	.	.	.	.	.	.															.																																							.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.															.																																							.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	R	V	A	L	I	F	G	G	N	S	S	E	H	D	V	S	K	R	S	A	Q	N	F	Y	N	A	I	E	A	T	G	K	Y	E	I	I	V	F	A	I	A	Q	N	G	F	F	L	D	T	E	S	S	K	K	I	L	A	L	E	D	E	Q	P	I	V	D	A	F	M	K	T	V	D	A	S	D	P	L	A
Template Known Secondary structure											S	S	T	T																	T	T	S	S										T	T	S													T	T												T	T			T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.
										74	.	.	.	.	.	80	.	.	.	.	.				.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.													.	.	.																	.																																							.	.
Query SS confidence		.	.	.	.	.	.	.	.													.	.	.																	.																																							.	.
Query Sequence		.	.	.	.	.	.	.	.	E	K	P	H	Y	I	V	P	E	I	E	A	.	.	.	I	A	T	D	M	L	I	Q	L	E	E	E	G	L	N	V	.	V	P	C	A	R	A	T	K	L	T	M	N	R	E	G	I	R	R	L	A	A	E	E	L	Q	L	P	T	S	T	Y	R	F	A	D	S	E	S	.	.
Query Conservation		.	.	.	.	.	.	.	.													.	.	.																	.																																							.	.
Alig confidence		.	.	.	.	.	.	.	.													.	.	.																	.																			.																				.	.
Template Conservation																																																												.
Template Sequence		R	I	H	A	L	K	S	A	G	D	F	D	I	F	F	P	V	V	H	G	N	L	G	E	D	G	T	L	Q	G	L	F	K	L	L	D	K	P	Y	V	G	A	P	L	R	G	H	A	V	S	F	D	K	A	L	T	K	E	.	L	L	T	V	N	G	I	R	N	T	K	Y	I	V	V	D	P	E	S	A	N
Template Known Secondary structure					T	T	S	T	T				S							T	T	T	T	T	S	S	S									T	T			B	S	S											S							.					T	T											T	T	G	G	G
Template Predicted Secondary structure																																																												.
Template SS confidence
		484	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.		.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.
				140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	L	F	R	E	A	V	A	D	I	G	Y	P	C	I	V	K	P	V	M	S	S	S	G	K	G	Q	T	F	I	R	S	A	E	Q	L	A	Q	A	W	K	Y	A	Q	Q	G	G	R	A	G	A	G	R	V	I	V	E	G	V	V	K	F	D	F	E	I	T	L	L	T	V	S	A	V	D	G	V	H	F
Query Conservation		.	.
Alig confidence		.	.																																																.	.	.	.
Template Conservation																																																			.	.	.	.
Template Sequence		N	W	S	W	D	K	I	V	A	E	L	G	N	I	V	F	V	K	A	A	N	Q	G	S	S	V	G	I	S	R	V	T	N	A	E	E	Y	T	E	A	L	S	D	S	F	Q	Y	D	Y	.	.	.	.	K	V	L	I	E	E	A	V	N	G	A	R	E	L	E	V	G	V	I	G	N	D	Q	P	L	V	S
Template Known Secondary structure		G										T		S							S	S			S	S	T	T						S												T	T	T		S	.	.	.	.																					S	S	S
Template Predicted Secondary structure																																																			.	.	.	.
Template SS confidence
		563	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.					.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.		.	.	.	.	.	280	.	.	.	.	.	.	.	.	.					290	.	.
Predicted Secondary structure																																																											.																.	.	.	.
Query SS confidence																																																											.																.	.	.	.
Query Sequence		C	A	P	V	G	H	R	Q	E	D	G	D	Y	R	E	S	W	Q	P	Q	Q	M	S	P	L	A	L	E	R	A	Q	E	I	A	R	K	V	V	L	A	L	G	G	Y	G	L	F	G	V	E	L	F	V	C	G	D	E	.	V	I	F	S	E	V	S	P	R	P	H	D	T	G	M	.	.	.	.	V	T	L
Query Conservation																																																											.																.	.	.	.
Alig confidence													.	.	.	.	.	.	.																																								.																.	.	.	.
Template Conservation													.	.	.	.	.	.	.
Template Sequence		E	I	G	A	H	T	V	H	F	Q	I	.	.	.	.	.	.	.	P	A	Q	L	S	P	E	V	T	K	E	V	K	Q	M	A	L	D	A	Y	K	V	L	N	L	R	G	E	A	R	M	D	F	L	L	D	E	N	N	V	P	Y	L	G	E	P	N	T	L	P	G	F	T	N	M	S	L	F	K	R	L	W
Template Known Secondary structure												S	.	.	.	.	.	.	.	S																						T	T													T	T										S	S				S	T	T	S	G	G	G	T	T	G
Template Predicted Secondary structure													.	.	.	.	.	.	.
Template SS confidence
		639	640	.	.	.	.	.	.	.	.	.								650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	Q	D	L	S	E	F	A	L	H	V	R	A	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	Y	S	D	I	N	N	A	K	L	V	D	M	L	I
Template Known Secondary structure		G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		734	.	.	.	.	.	740	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions