Job Description P33221 Confidence 100.00% Date Wed Jan 25 15:20:50 GMT 2012 Rank 40 Aligned Residues 287 % Identity 19% Template c1e4eB_ PDB info PDB header:ligase Chain: B: PDB Molecule:vancomycin/teicoplanin a-type resistance protein vana; PDBTitle: d-alanyl-d-lacate ligase Resolution 2.5 Å

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		14	.	.	.	.	.	20	.	.										.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.												.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.					.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.
Query Sequence		R	V	M	L	L	G	S	G	E	.	.	.	.	.	.	.	.	.	L	G	K	E	V	A	I	E	C	Q	R	L	G	V	E	V	I	A	V	D	R	Y	A	.	.	.	.	.	.	.	.	.	.	.	D	A	P	A	M	H	V	A	H	R	S	H	V	I	N	M	L	D	G	D	A	L	R	.	.	.	.	R
Query Conservation											.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.
Template Conservation
Template Sequence		K	V	A	I	L	F	G	G	C	S	E	E	H	D	V	S	V	K	S	A	I	E	I	A	A	N	I	N	K	E	K	Y	E	P	L	Y	I	G	I	T	K	S	G	V	W	K	M	C	E	K	P	C	A	E	W	E	N	E	N	C	Y	S	A	V	L	S	P	D	K	K	M	H	G	L	L	V	K	K	N	H
Template Known Secondary structure										S	S	T	T													T	T	S		T	T	T										T	T	S						S	S		S	T	T				T	T										T	T	T							S	S	S
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.				.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																		.	.	.																	.
Query SS confidence																		.	.	.																	.
Query Sequence		V	V	E	L	E	K	P	H	Y	I	V	P	E	I	E	A	.	.	.	I	A	T	D	M	L	I	Q	L	E	E	E	G	L	N	V	.	V	P	C	A	R	A	T	K	L	T	M	N	R	E	G	I	R	R	L	A	A	E	E	L	Q	L	P	T	S	T	Y	R	F	A	D	S	E	S	L	F	R	E	A	V
Query Conservation																		.	.	.																	.
Alig confidence																		.	.	.																	.																			.																						.	.
Template Conservation																																																								.																						.	.
Template Sequence		E	Y	E	I	N	H	V	D	V	A	F	S	A	L	H	G	K	S	G	E	D	G	S	I	Q	G	L	F	E	L	S	G	I	P	F	V	G	C	D	I	Q	S	S	A	I	C	M	D	K	S	L	T	Y	I	.	V	A	K	N	A	G	I	A	T	P	A	F	W	V	I	N	K	D	D	R	P	.	.	V	A
Template Known Secondary structure		S							S								S	T	T	T	T	S	S										T			B	S	S											S							.					T	T											S	S				.	.		G
Template Predicted Secondary structure																																																								.																						.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.			160	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	I	G	Y	P	C	I	V	K	P	V	M	S	S	S	G	K	G	Q	T	F	I	R	S	A	E	Q	L	A	Q	A	W	K	Y	A	Q	Q	G	G	R	A	G	A	G	R	V	I	V	E	G	V	V	K	F	D	F	E	I	T	L	L	T	V	S	A	V	D	G	V	H	F	C	A	P	V	G	H	R	Q
Query Conservation
Alig confidence																																											.	.	.	.											.
Template Conservation																																											.	.	.	.											.
Template Sequence		A	T	F	T	Y	P	V	F	V	K	P	A	R	S	G	S	S	F	G	V	K	K	V	N	S	A	D	E	L	D	Y	A	I	E	S	A	R	Q	Y	D	S	.	.	.	.	K	I	L	I	E	Q	A	V	S	G	.	C	E	V	G	C	A	V	L	G	N	S	A	A	L	V	V	G	E	V	D	Q	I	R	L
Template Known Secondary structure		G	G	S		S	S						S	S			T	T	T	T						S	G	G	G									T	T	T		S	.	.	.	.	S									S	.											T	T
Template Predicted Secondary structure																																											.	.	.	.											.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.					.	.	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		226	.	.	.	230															.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.		.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.															.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.															.	.
Query Sequence		E	D	G	D	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	S	W	Q	P	Q	Q	M	S	P	L	A	L	E	R	A	Q	E	I	A	R	K	V	V	L	A	L	G	G	Y	G	L	F	G	V	E	L	F	V	C	G	D	E	.	V	I	F	S	E	V	S	P	R	P	H	D	T	G	.	.
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.															.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.															.	.
Template Conservation
Template Sequence		Q	Y	G	I	F	R	I	H	Q	E	V	E	P	E	K	G	S	E	N	A	V	I	T	V	P	A	D	L	S	A	E	E	R	G	R	I	Q	E	T	V	K	K	I	Y	K	T	L	G	C	R	G	L	A	R	V	D	M	F	L	Q	D	R	G	R	I	V	L	N	E	V	N	T	L	P	G	F	T	S	Y	S
Template Known Secondary structure		S	S	S				G	G	G	S	S	S	G	G	G			S	S					S	S		S	S																			T	T													T	T										S	S				S	T	T
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
				289	290	.	.	.	.	.	.	.	.	.	300	.	.				.	.	.	.	.	.
Predicted Secondary structure		.	.															.	.	.
Query SS confidence		.	.															.	.	.
Query Sequence		.	.	M	V	T	L	I	S	Q	D	L	S	E	F	A	L	.	.	.	H	V	R	A	F	L
Query Conservation		.	.															.	.	.
Alig confidence		.	.															.	.	.
Template Conservation
Template Sequence		R	Y	P	R	M	M	A	A	A	G	I	S	L	P	E	L	I	D	R	L	I	V	L	A	L
Template Known Secondary structure										T	T
Template Predicted Secondary structure
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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