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Job DescriptionP33931
Confidence100.00%DateThu Jan 5 11:52:54 GMT 2012
Rank37Aligned Residues201
% Identity22%Templatec3b5xB_
PDB info PDB header:membrane proteinChain: B: PDB Molecule:lipid a export atp-binding/permease protein msba; PDBTitle: crystal structure of msba from vibrio cholerae
Resolution5.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10... ......20.........30.........40.........50.........60.........70. ........80
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Query Sequence  LEARELLCER. . DERTLFSGLSFTLNAGEWVQITGSNGAGKTTLLRLLTGLSRPDAGEVLWQGQPLHQVR. DSYHQNLLW
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Template Sequence  VDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFAL
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B

S



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S
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   342.......350.........360.........370.........380.........390.........400.........410.........420.
 
   81........90.........100 .........110.........120....... ..130.........140........
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Query Sequence  IGHQPGIKTRLTALENLHFY. HRDGDTAQCLEALAQAGLAGFEDIPVN. . . . . . . . . . . QLSAGQQRRVALARLWLTRAT
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Template Sequence  VSQNVHLFND. TIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAP
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SS



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   422.......430. ........440.........450.........460.........470.........480.........490.........500
 
   149150.........160.........170.........180.........190.........200.......
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Query Sequence  LWILDEPFTAIDVNGVDRLTQRMAQHTEQGGIVILTTHQPLNVAESKIRRISLTQTRAA
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Template Sequence  VLILDEATSALDTESERAIQAALDELQK. NKTVLVIAHRLSTI. EQADEILVVDEGEII
Template Known Secondary structure  S

S
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   501........510.........520........ .530.........540.. .......550.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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