Job Description P33931 Confidence 92.78% Date Thu Jan 5 11:52:54 GMT 2012 Rank 498 Aligned Residues 123 % Identity 17% Template c2vbcA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:dengue 4 ns3 full-length protein; PDBTitle: crystal structure of the ns3 protease-helicase from dengue2 virus Resolution 3.15 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		L	N	A	G	E	W	V	Q	I	T	G	S	N	G	A	G	K	T	T	.	L	L	R	L	L	T	G	L	S	R	P	D	A	G	E	V	L	W	Q	G	Q	P	L	H	Q	V	R	D	S	Y	H	Q	N	L	L	W	I	G	H	Q	P	G	I	K	T	R	L	T	A	L	E	N	L	H	F	Y	H	R	D	G
Query Conservation																					.
Alig confidence																					.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	R	K	K	R	L	T	I	M	D	L	H	P	G	A	G	K	T	K	R	I	L	P	S	I	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	A	L	K	R	R	L	R	T	L	I	L	A	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	R	V
Template Known Secondary structure			S	T	T									T	T	T			T	T	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T								S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.																		.	210	.	.	.	.	.	.	.	.	.	220	.	.	.																				.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.					.	.	.	.	140	.	.	.	.	.	.	.						.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.													.	.	.	.	.
Query SS confidence																																	.	.	.	.													.	.	.	.	.
Query Sequence		D	T	A	Q	C	L	E	A	L	A	Q	A	G	L	A	G	F	E	D	I	P	V	N	Q	L	S	A	G	Q	Q	R	.	.	.	.	R	V	A	L	A	R	L	W	L	T	R	A	.	.	.	.	.	T	L	W	I	L	D	E	P	F	T	A	I	D	V	N	G	V	D	R	L	T	Q	R	M	A	Q	H	T
Query Conservation																																	.	.	.	.													.	.	.	.	.
Alig confidence																																	.	.	.	.													.	.	.	.	.									.
Template Conservation																																																														.
Template Sequence		V	A	A	E	M	E	E	A	L	R	G	L	P	I	R	Y	Q	T	P	A	V	K	S	D	H	T	G	R	E	I	V	D	L	M	C	H	A	T	F	T	T	R	L	L	S	S	T	R	V	P	N	Y	N	L	I	V	M	D	E	A	.	H	F	T	D	P	C	S	V	A	A	R	G	Y	I	S	T	R	V	E
Template Known Secondary structure										T	T	T	S							T	T		S						S	S																		S						S						S	T	.	T			S
Template Predicted Secondary structure																																																														.
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.		.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
		176	.	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q	G	G	I	V	I	L	T	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	G	E	A	A	A	I	F	M	T
Template Known Secondary structure			T	S
Template Predicted Secondary structure
Template SS confidence
		306	.	.	.	310	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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