Return to main results Retrieve Phyre Job Id

Job DescriptionP33931
Confidence98.45%DateThu Jan 5 11:52:54 GMT 2012
Rank84Aligned Residues130
% Identity23%Templatec2o8dB_
PDB info PDB header:dna binding protein/dnaChain: B: PDB Molecule:dna mismatch repair protein msh6; PDBTitle: human mutsalpha (msh2/msh6) bound to adp and a g du mispair
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   910.........20.. .......30 .........40.........50 .........60........
Predicted Secondary structure 



...



........








.........

















Query SS confidence 













. . .







. . . . . . . .



















. . . . . . . . .

















Query Sequence  LLCERDERTLFSGL. . . SFTLNAGE. . . . . . . . WVQITGSNGAGKTTLLRLLT. . . . . . . . . GLSRPDAGEVLWQGQPLH
Query Conservation 
        

  
...
  
  

........   
 
 








  
 .........
      
 
   
    
Alig confidence 













...







........



















.........

















Template Conservation 
 
  



  
  




 
              











 






 





  


  
 
 
 
 


Template Sequence  LELKGSRHPCGDDFIPNDILIGCEEEEQENKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFT
Template Known Secondary structure 













STT




B

TTSSTTT

BSSS


SB
Template Predicted Secondary structure 







































Template SS confidence 















































































   10891090.........1100.........1110.........1120.........1130.........1140.........1150.........1160........
 
   6970.........80.........90.........100.........110.........120.........130.........140... ...
Predicted Secondary structure 








































..
Query SS confidence 










































































. .


Query Sequence  QVRDSYHQNLLWIGHQPGIKTRLTALENLHFYHRDGDTAQCLEALAQAGLAGFEDIPVNQLSAGQQRRVALARLW. . LTR
Query Conservation                         

 
 
               
    
          

 
   

 

 

..   
Alig confidence 


..........................................................













..


Template Conservation 


..........................................................


 


 
   

  

 
Template Sequence  RLG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . STFFVELSETASILMHATA
Template Known Secondary structure 

..........................................................


T
Template Predicted Secondary structure 


..........................................................


Template SS confidence 















































































   1176.. .1180.........1190.......
 
   147..150.........160. ........170....... ..180.........190.......
Predicted Secondary structure 









.
.





Query SS confidence 














.















.



















Query Sequence  ATLWILDEPFTAIDV. NGVDRLTQRMAQHTEQ. GGIVILTTHQPLNVAESKIR
Query Conservation 
 






  


 .     
   
      .  



 

           
Alig confidence 














.















.










.







Template Conservation   













 

 


 



 
        




  .

      
Template Sequence  HSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYH. SLVEDYSQ
Template Known Secondary structure  T

S
TTS
TS




.TSS
Template Predicted Secondary structure 














.
Template SS confidence 




















































   1207..1210.........1220.........1230.........1240.........1250 ........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions