|   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
|
|
|
|  |  |
|
|
|
|
|
|  |  |
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | Q | K | Y | L | F | I | D | R | D | G | T | L | I | S | E | P | P | S | D | F | Q | V | D | R | F | D | K | L | A | F | E | P | G | V | I | P | E | L | L | K | L | Q | K | A | G | Y | K | L | V | M | I | T | N | Q | D | G | L | G | T | Q | S | F | P | Q | A | D | F | D | G | P | H | N | L | M | M | Q | I | F | T |
Query Conservation |   |
|   |
|   |
|
|
|
|   |
|
|
|
|
|
|
|   |   |   |
|
|   |
|   |   |   |
|   |
|   |
|   |
|
|
|   |
|   |
|   |   |
|
|   |   |
|   |
|
|   |
|
|
|
|
|   |
|
|   |   |
|   |   |   |   |   |   |
|   |   |
|   |   |   |
|   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|
|
|
|
|
|   |
|
|
|
|   |
|
|   |   | . | . | . |   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |
|   |
|   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
Template Sequence |   |
H | L | P | A | L | F | L | D | R | D | G | T | I | N | V | D | T | D | . |
. |
. |
Y | P | S | D | P | A | E | I | V | L | R | P | Q | X | L | P | A | I | A | T | A | N | R | A | G | I | P | V | V | V | V | T | N | Q | S | G | I | A | R | G | Y | F | G | W | S | A | F | A | A | V | N | G | R | V | L | E | L | L | R |
Template Known Secondary structure |   |
S |
|
|
|  |  |  |
| S | B | T | T | T | B |
|
|
| S | . | . | . |
| T | T |
| G | G | G |
|
| B |
| G | G | G |  |  |  |  |  |  |  |  |  |  | T |
|
|  |  |  |  |  |  |
|  |  |  |  | T | T | S |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
|
|
|
|  |  |
|
|
|  | . | . | . |  |  |
|
|  |  |  |
|  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
29 | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | |
|
|
. | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . |
  |
  |   |
82 | . | . | . | . | . | . | . | 90 | |
|
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . |
Predicted Secondary structure |   |
 |
|
|
|  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | Q | G | V | Q | F | D | E | V | . |
. |
. |
. |
. |
. |
. |
L | I | C | P | H | L | P | A | D | E | C | D | C | R | K | P | K | V | K | L | V | E | R | Y | L | A | E | Q | A | M | D | R | A | N | S | Y | V | I | G | D | R | A | T | D | I | Q | L | A | E | N | M | G | I | T | G | L | R | Y | D | R | E | T |
Query Conservation |   |
  |   |
|
|   |
|
|   |
| . | . | . | . | . | . | . |
|
|   |   |
|   |   |   |
|   |   |   |   |
|
|
|   |
|   |
|
|   |   |
|
|   |   |
|
|
|
|
|   |
|   |
|
|
|
|
|
|   |   |
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|
|   |
|   |   |   |   |   |
|   |   |   |
|
|   |   |
|
|   |   |
|   |
|
|
|
|   |   |
|
|   |
|
|   |   |
|
|
|   |   |
|   |
|   |   |
|   |
Template Sequence |   |
E | E | G | V | F | V | D | X | V | L | A | C | A | Y | H | E | A | G | V | G | P | L | A | I | P | D | H | P | X | R | K | P | N | P | G | X | L | V | E | A | G | K | R | L | A | L | D | L | Q | R | S | L | I | V | G | D | K | L | A | D | X | Q | A | G | K | R | A | G | L | A | Q | G | W | L | V | D | G | E |
Template Known Secondary structure |   |
 | T | T |
|
|
| S |  |  |  |  |  |
|
|
| T | T |
|
| S | T | T |
|
| S | S |
| T | T | S | T | T | S |
|  |  |  |  |  |  |  |  |  |  | T |
|
| G | G | G |
|  |  |  |  | S | S |  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  |  |  | T |
|
|
Template Predicted Secondary structure |   |
 |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
106 | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . |
  |