Return to main results Retrieve Phyre Job Id

Job DescriptionP06987
Confidence98.99%DateThu Jan 5 10:59:44 GMT 2012
Rank108Aligned Residues117
% Identity28%Templated1rkqa_
SCOP infoHAD-like HAD-like Predicted hydrolases Cof
Resolution1.40

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
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Query Sequence  MSQKYLFIDRDGTLISEPPSDFQVDRFDKLAFEPGVIPELLKLQKAGYKLVMITNQDGLGTQSFPQADFDGPHNLMMQIF
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Template Sequence  LAIKLIAIDMDGTLLLPD. . . . . . . . . . . HTISPAVKNAIAAARARGVNVVLTTGRP. . . . . . . . . . . . . . . YAGVHNYL
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S
TT...........S


TT

SS
...............GGGT
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   2.......10......... 20.........30.........40....... ..50.....
 
   81........90.........100....
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Query Sequence  TSQGVQFDEVLICPHLPADECDCR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation                                                                                  
Template Sequence  KELHMEQPGDYCITYNGALVQKAADGSTVAQTALSYDDYRFLEKLSREVGSHFHALDRTTLYTANRDISYYTVHESFVAT
Template Known Secondary structure  TT

STT
GGGTTTT



B
T

SS


SS

TT
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   56...60.........70.........80.........90.........100.........110.........120.........130.....
 
   105....110.........120....
Predicted Secondary structure  ............................................................






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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . KPKVKLVERYLAEQAMDRAN
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Template Conservation                                                                
                 
Template Sequence  IPLVFCEAEKMDPNTQFLKVMMIDEPAILDQAIARIPQEVKEKYTVLKSAPYFLEILDKRVNKGTGVKSLADVLGIKPEE
Template Known Secondary structure 



GGGS
TT

B


S
TTTT
ST

GGG
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   136...140.........150.........160.........170.........180.........190.........200.........210.....
 
   125....130.........140...
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Query Sequence  SYVIGDRATDIQLAENMGI
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Template Sequence  IMAIGDQENDIAMIEYAGV
Template Known Secondary structure 
SGGGSS
Template Predicted Secondary structure 



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   216...220.........230....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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