Return to main results Retrieve Phyre Job Id

Job DescriptionP06987
Confidence28.04%DateThu Jan 5 10:59:44 GMT 2012
Rank182Aligned Residues87
% Identity8%Templatec3no3A_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:glycerophosphodiester phosphodiesterase; PDBTitle: crystal structure of a glycerophosphodiester phosphodiesterase2 (bdi_0402) from parabacteroides distasonis atcc 8503 at 1.89 a3 resolution
Resolution1.89 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   253......260.........270.... .....280.........290...... ...300.........310......
Predicted Secondary structure 




..













..............

Query SS confidence 





















. .





















. . . . . . . . . . . . . .



















Query Sequence  ICRFGFVLPMDECLARCALDIS. . GRPHLEYKAEFTYQRVGDLSTE. . . . . . . . . . . . . . MIEHFFRSLSYTMGVTLHLK
Query Conservation 
 
 
   



 
     
 
..

              
    
..............    
            
  
Alig confidence 





















..





















..............



















Template Conservation    
   
   
   

 

 

 

  

 

  
 
  
   
  

  
       



 
 
          
 

Template Sequence  IRSLERASEIGAYGSEFDVHLTADNVLVVYHDNDIQGKHIQSCTYDELKDLQLSNGEKLPTLEQYLKRAKKLKNIRLIFE
Template Known Secondary structure  TT
S
TTS

SSSTTGGGS
TT
B
TTS
B

B
TT
Template Predicted Secondary structure 
































Template SS confidence 















































































   44.....50.........60.........70.........80.........90.........100.........110.........120...
 
   317..320.........330.........
Predicted Secondary structure 

Query SS confidence 






















Query Sequence  TKGKNDHHRVESLFKAFGRTLRQ
Query Conservation    
 
 

  

 


   

  
Alig confidence 






















Template Conservation 

                     
Template Sequence  LKSHDTPERNRDAARLSVQXVKR
Template Known Secondary structure 


SS
Template Predicted Secondary structure 






Template SS confidence 






















   124.....130.........140......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions