Job Description P06987 Confidence 95.46% Date Thu Jan 5 10:59:44 GMT 2012 Rank 154 Aligned Residues 108 % Identity 25% Template c3ef1A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:rna polymerase ii subunit a c-terminal domain PDBTitle: the structure of fcp1, an essential rna polymerase ii ctd2 phosphatase Resolution 2.15 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20																							.	.	.	.	.	.	.	.	.								30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.
Query Sequence		S	Q	K	Y	L	F	I	D	R	D	G	T	L	I	S	E	P	P	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	F	Q	V	D	R	F	D	K	.	.	.	.	.	.	.	L	A	F	E	P	G	V	I	P	E	L	L	K	L	Q	K	A	G	Y	K	L	V	M
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.																		.
Template Conservation																																																																												.
Template Sequence		E	K	R	L	S	L	I	V	L	D	Q	T	I	I	H	A	T	V	D	P	T	V	G	E	W	M	S	D	P	G	N	V	N	Y	D	V	L	R	D	V	R	S	F	N	L	Q	E	G	P	S	G	Y	T	S	C	Y	Y	I	K	F	R	P	G	L	A	Q	F	L	Q	K	I	S	E	L	.	Y	E	L	H	I
Template Known Secondary structure		T	T								B	T	T	T							T							T		T	T	S	T	T	T	G	G	G	T	T									T	T	T	T											T	T									T	T	T	.
Template Predicted Secondary structure																																																																												.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.		.	.	.	.	240
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.		.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure																																																																				.
Query SS confidence																																																																				.
Query Sequence		I	T	N	Q	D	G	L	G	T	Q	S	F	P	Q	A	D	F	D	G	P	H	N	L	M	M	Q	I	F	T	S	Q	G	V	Q	F	D	E	V	L	I	C	P	H	L	P	A	D	E	C	D	C	R	K	P	K	V	K	L	V	E	R	Y	L	A	E	Q	.	A	M	D	R	A	N	S	Y	V	I	G	D	R
Query Conservation																																																																				.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.																										.	.										.	.	.	.	.	.	.	.						.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.																										.	.										.	.	.	.	.	.	.	.
Template Sequence		Y	T	M	G	T	.	.	.	.	.	.	.	.	.	.	.	.	K	A	Y	A	K	E	V	A	K	I	I	D	P	T	G	K	L	F	Q	D	R	V	L	S	R	.	.	D	D	S	G	S	L	A	Q	K	.	.	.	.	.	.	.	.	S	L	R	R	L	F	P	C	D	T	S	M	V	V	V	I	D	D	R
Template Known Secondary structure				S	S		.	.	.	.	.	.	.	.	.	.	.	.													T	T	S	T	T	T	T	T					T	.	.	T	T	S	S		S	S			.	.	.	.	.	.	.	.		G	G	G	T		S	S			T	T						S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.																										.	.										.	.	.	.	.	.	.	.
Template SS confidence
		242	.	.	.	.													.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.			.	.	.	.	.	.	.	.	280									.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
		132
Predicted Secondary structure
Query SS confidence
Query Sequence		A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		300

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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