Job Description P06987 Confidence 97.34% Date Thu Jan 5 10:59:44 GMT 2012 Rank 147 Aligned Residues 112 % Identity 21% Template c3bwvB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:putative 5'(3')-deoxyribonucleotidase; PDBTitle: crystal structure of deoxyribonucleotidase-like protein (np_764060.1)2 from staphylococcus epidermidis atcc 12228 at 1.55 a resolution Resolution 1.55 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.												.	.	.	20	.	.	.	.	.	.	.																			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	K	Y	L	F	I	D	R	D	G	T	L	I	S	.	.	.	.	.	.	.	.	.	.	.	E	P	P	S	D	F	Q	V	D	R	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	K	L	A	F	E	P	G	V	I	P	E	L	L	K	L	Q	K	A	G	Y	K	L	V	M	I
Query Conservation																.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Template Conservation																																																																											.
Template Sequence		R	Q	R	I	A	I	D	X	D	E	V	L	A	D	T	L	G	A	V	V	K	A	V	N	E	R	A	D	L	N	I	K	X	E	S	L	N	G	K	K	L	G	L	V	X	D	I	L	K	E	P	G	F	F	R	N	L	D	V	X	P	H	A	Q	E	V	V	K	Q	L	N	E	H	.	Y	D	I	Y	I	A
Template Known Secondary structure										B	T	T	T	B														T	T					G	G	G	G	T	T	S											S	T	T	T	T	T	S			B		T	T									T	T	T	.	S
Template Predicted Secondary structure																																																																											.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80	.
		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	N	Q	D	G	L	G	T	Q	S	F	P	Q	A	D	F	D	G	P	H	N	L	M	M	Q	I	F	T	S	Q	G	V	Q	F	D	E	V	L	I	C	P	H	L	P	A	D	E	C	D	C	R	K	P	K	V	K	L	V	E	R	Y	L	A	E	Q	A	M	D	R	A	N	S	Y	V	I	G	D	R	A	T
Query Conservation
Alig confidence				.	.	.	.	.	.																					.	.											.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.							.	.	.	.
Template Conservation				.	.	.	.	.	.																					.	.											.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.							.	.	.	.
Template Sequence		T	A	.	.	.	.	.	.	A	X	D	V	P	T	S	F	H	D	K	Y	E	W	L	L	E	Y	F	P	.	.	F	L	D	P	Q	H	F	V	F	C	.	.	.	.	.	.	.	.	.	.	.	G	R	K	.	.	.	.	.	.	.	.	N	I	I	L	A	D	.	.	.	.	Y	L	I	D	D	N	P	K
Template Known Secondary structure				.	.	.	.	.	.	S	S	S	S	G	G	G													T	.	.	T	S		G	G	G					.	.	.	.	.	.	.	.	.	.	.	S	S	G	.	.	.	.	.	.	.	.	G	G				S	.	.	.	.					S
Template Predicted Secondary structure				.	.	.	.	.	.																					.	.											.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.							.	.	.	.
Template SS confidence
		90	.							.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.			.	.	.	.	.	.	.	.	120	.												.	.	.									.	.	.	.	.	130					.	.	.	.	.	.	.	.
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	Q	L	A	E	N	M	G	I	T	G	L	R	Y	D
Query Conservation
Alig confidence			.	.	.
Template Conservation			.	.	.
Template Sequence		Q	.	.	.	L	E	I	F	E	G	K	S	I	X	F	T
Template Known Secondary structure			.	.	.		T	T		S	S
Template Predicted Secondary structure			.	.	.
Template SS confidence
		139				140	.	.	.	.	.	.	.	.	.	150	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions