Job Description P06987 Confidence 20.59% Date Thu Jan 5 10:59:44 GMT 2012 Rank 192 Aligned Residues 97 % Identity 15% Template c2qghA_ PDB info PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure of diaminopimelate decarboxylase from helicobacter2 pylori complexed with l-lysine Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130			.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure																				.	.
Query SS confidence																				.	.
Query Sequence		R	Y	L	A	E	Q	A	M	D	R	A	N	S	Y	V	I	G	D	.	.	R	A	T	D	I	Q	L	A	E	N	M	G	I	T	G	L	R	Y	D	R	E	T	L	N	W	P	M	I	G	E	Q	L	T	R	R	D	R	Y	A	H	V	V	R	N	T	K	E	T	Q	I	D	V	Q	V	W	L	D	R	E	G
Query Conservation																				.	.
Alig confidence																				.	.																							.																				.	.	.	.	.	.	.
Template Conservation																																												.																				.	.	.	.	.	.	.
Template Sequence		Q	R	A	L	K	A	G	I	K	P	Y	R	I	V	F	S	G	V	G	K	S	A	F	E	I	E	Q	A	L	K	L	N	I	L	F	L	N	V	E	S	F	M	.	E	L	K	T	I	E	T	I	A	Q	S	L	G	I	K	A	R	I	S	.	.	.	.	.	.	.	I	R	I	N	P	N	I	D	A	K	T
Template Known Secondary structure							T	T			G	G	G						T	T												T	T		S						S			.													T							.	.	.	.	.	.	.			B								S
Template Predicted Secondary structure																																												.																				.	.	.	.	.	.	.
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.		.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.								.	.	.	.	.	.	140	.	.	.	.
		191	.	.	.	.	.	.	.						.	200					.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.			.	.	.	.
Query SS confidence										.	.	.	.	.			.	.	.	.
Query Sequence		G	S	K	I	N	T	G	V	.	.	.	.	.	G	F	.	.	.	.	F	D	H	M	L	D	Q	I	A	T	H	G	G	F	R	M	E
Query Conservation										.	.	.	.	.			.	.	.	.
Alig confidence										.	.	.	.	.			.	.	.	.
Template Conservation
Template Sequence		H	P	Y	I	S	T	G	L	K	E	N	K	F	G	V	G	E	K	E	A	L	E	M	F	L	W	A	K	K	S	A	F	L	E	P	V
Template Known Secondary structure			G	G	G	B			S	T	T	S	S	S	S	B																S	S
Template Predicted Secondary structure
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions