Job Description P06987 Confidence 26.11% Date Thu Jan 5 10:59:44 GMT 2012 Rank 185 Aligned Residues 76 % Identity 12% Template c2ba0A_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:archeal exosome rna binding protein rrp4; PDBTitle: archaeal exosome core Resolution 2.70 Å

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		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.												.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	A	H	V	V	R	N	T	K	E	T	Q	I	D	V	Q	V	W	L	D	R	E	G	G	.	.	.	.	.	.	.	.	.	.	.	S	K	I	N	T	G	V	G	F	F	D	H	M	L	D	Q	I	A	T	H	G	G	F	R	M	E	I	N	V	K	G	D	L	Y	I	D	D	H	H	T	V	E	D	T	G
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.																																							.	.
Template Conservation																																																																											.	.
Template Sequence		I	A	K	V	L	N	I	D	P	K	M	K	V	T	L	T	M	K	D	R	I	C	R	P	I	R	F	G	R	I	V	A	I	N	P	A	R	V	P	R	V	I	G	K	K	G	S	M	I	K	L	L	K	S	E	L	D	V	Q	I	V	V	G	Q	N	G	L	I	W	V	N	G	D	.	.	R	R	K	V	S
Template Known Secondary structure										T	T									S	S	S					S	S	S							G	G	G							G	G	G											T							T	T	S						S		.	.
Template Predicted Secondary structure																																																																											.	.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.			.	.	.	.	.
		237	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	L	G	E	A	L	K	I	A
Query Conservation
Alig confidence					.
Template Conservation					.
Template Sequence		I	A	E	.	E	A	I	Y	L	I
Template Known Secondary structure					.
Template Predicted Secondary structure					.
Template SS confidence
		188	.	190		.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions