Job Description P0AFL3 Confidence 100.00% Date Thu Jan 5 11:26:39 GMT 2012 Rank 16 Aligned Residues 163 % Identity 26% Template c1z81A_ PDB info PDB header:isomerase Chain: A: PDB Molecule:cyclophilin; PDBTitle: crystal structure of cyclophilin from plasmodium yoelii. Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.						.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.									.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.																												.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.																												.	.	.	.	.	.	.	.
Query Sequence		L	S	P	A	A	M	A	A	K	G	D	P	H	V	L	L	T	T	S	.	.	.	.	.	A	G	N	I	E	L	E	L	D	K	Q	K	A	P	V	S	V	Q	N	F	V	D	Y	V	N	S	G	.	.	.	.	.	.	.	.	F	Y	N	N	T	T	F	H	R	V	I	P	G	F	M	I	Q	G	G	G	F
Query Conservation																					.	.	.	.	.																												.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.																												.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	L	S	N	L	L	T	N	P	S	N	P	V	V	F	M	D	I	N	L	G	N	N	F	L	G	K	F	K	F	E	L	F	Q	N	I	V	P	K	T	S	E	N	F	R	Q	F	C	T	G	E	Y	K	V	N	N	L	P	V	G	Y	K	N	T	I	F	H	R	V	I	K	E	F	M	I	Q	G	G	D	F
Template Known Secondary structure			G	G	G	G	S	S	S	T	T											T	T												T	T	T														T			B	S	S	S	S	B		S	S	T	T								T	T	T							T
Template Predicted Secondary structure
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
					85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.			.	.	.	.
Predicted Secondary structure		.	.	.																																																																								.	.
Query SS confidence		.	.	.																																																																								.	.
Query Sequence		.	.	.	T	E	Q	M	Q	Q	K	K	P	N	P	P	I	K	N	E	A	D	N	G	L	R	N	T	R	G	T	I	A	M	A	R	T	A	D	K	D	S	A	T	S	Q	F	F	I	N	V	A	D	N	A	F	L	D	H	G	Q	R	D	F	G	Y	A	V	F	G	K	V	V	K	G	.	.	M	D	V	A
Query Conservation		.	.	.																																																																								.	.
Alig confidence		.	.	.																	.																																						.	.	.	.	.													.	.
Template Conservation																					.																																						.	.	.	.	.
Template Sequence		I	N	H	N	G	S	G	S	L	S	I	Y	G	E	K	F	D	D	E	.	N	F	D	I	K	H	D	K	E	G	L	L	S	M	A	N	S	G	P	N	T	N	G	C	Q	F	F	I	T	T	K	K	C	E	W	L	D	.	.	.	.	.	G	K	N	V	V	F	G	R	I	I	D	N	D	S	L	L	L	L
Template Known Secondary structure		T	T	S	S	S					B	T	T	B	S						.				S				S	T	T							S	S	S	S				S						S	S			G	G	G	B	.	.	.	.	.	T	T	B								S
Template Predicted Secondary structure																					.																																						.	.	.	.	.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.						.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	K	I	S	Q	V	P	T	H	D	V	G	P	Y	Q	N	V	P	S	K	P	V	V	I	L	S	A	K	V	L
Query Conservation
Alig confidence												.	.	.
Template Conservation												.	.	.
Template Sequence		K	K	I	E	N	V	S	V	T	P	.	.	.	Y	I	Y	K	P	K	I	P	I	N	V	V	E	C	G	E	L
Template Known Secondary structure							S		B		T	.	.	.	T	T			B	S	S
Template Predicted Secondary structure												.	.	.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.				.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions