Job Description P37339 Confidence 99.37% Date Thu Jan 5 11:55:20 GMT 2012 Rank 140 Aligned Residues 196 % Identity 19% Template c3q9tB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:choline dehydrogenase and related flavoproteins; PDBTitle: crystal structure analysis of formate oxidase Resolution 2.24 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.		.	.	.	.	.	.	.	30	.	.	.	.	.
Predicted Secondary structure																							.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	D	F	V	I	I	G	G	G	I	I	G	M	S	T	A	M	Q	L	I	D	.	V	Y	P	D	A	R	I	A	L	L	E	K	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																							.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.		.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.
Template Sequence		F	D	F	V	I	V	G	G	G	T	A	G	N	T	V	A	G	R	L	A	E	N	P	.	.	N	V	T	V	L	I	V	E	A	G	I	G	N	P	E	D	I	P	E	I	T	T	P	S	S	A	M	D	L	R	N	S	K	Y	D	W	A	Y	K	T	T	M	V	R	R	D	D	Y	E	R	I	E	K	P	N
Template Known Secondary structure								S		S											T	T	S	T	.	.	T	S							S	S		S		G	G	G						S	G	G	G	G	G	G	G	T	T	S	T	T	B											T	T
Template Predicted Secondary structure																									.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30			.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
				36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.			.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.																				90	.	.
Predicted Secondary structure		.	.																																					.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.																																					.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	S	A	P	A	C	H	Q	T	G	H	N	S	G	V	I	H	A	G	V	Y	Y	T	P	G	S	L	K	A	Q	F	C	L	A	G	N	R	.	.	A	T	K	A	F	C	D	Q	N	G	I	R	Y	D	N	C	G	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	L	V
Query Conservation		.	.																																					.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																.	.	.	.																		.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.
Template Sequence		T	R	G	K	T	L	G	G	S	S	S	L	N	Y	F	T	W	.	.	.	.	V	P	G	H	K	A	T	F	D	Q	W	E	E	F	G	G	K	E	W	T	W	D	P	L	V	P	Y	L	R	K	S	A	T	Y	H	D	D	P	R	L	Y	S	P	E	L	E	K	I	G	G	G	G	P	I	P	I	S	H	A
Template Known Secondary structure				B		S	T	T	G	G	G	G	T	S					.	.	.	.										T	T						G	G	G	S										T	T						T	T			S		G	G	G	G	G	G			S		S
Template Predicted Secondary structure																			.	.	.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.					.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	S	D	L	E	M	E	R	M	R	A	L	W	E	R	T	A	A	N	G	I	E	R	E	W	L	N	A	D	E	L	R	E	R	E	P	N	I	T	G	L	G	G	I	F	V	P	S	S	G	I	V	S	Y	R	D	V	T	A	A	M	A	K	I	F	Q	S	R	G	G	E	I	I	Y	N	A	E	V	S
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.
Template Sequence		E	L	I	D	E	M	A	P	F	R	E	N	L	T	K	A	W	K	S	M	G	Q	P	L	I	E	.	.	.	.	.	.	.	.	.	.	N	I	Y	D	G	E	M	D	G	L	T	H	C	C	D	T	I	Y	R	G	Q	R	S	G	S	F	L	F	V	K	N	K	P	N	I	T	I	V	P	E	V	H	S	K
Template Known Secondary structure					G	G	G													T	T	T			B		S	.	.	.	.	.	.	.	.	.	.			S	S	S											S			T	T					G	G	G	G	S	S	S		T	T						S
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.											.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		173	.	.	.	.	.	.						180	.	.	.	.	.	.	.	.	.	190	.	.				.	.	.	.	.	.	.	200	.	.		.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure									.	.	.	.	.														.	.	.											.
Query SS confidence									.	.	.	.	.														.	.	.											.
Query Sequence		G	L	N	E	H	K	N	.	.	.	.	.	G	V	V	I	R	T	R	Q	G	G	E	Y	E	.	.	.	A	S	T	L	I	S	C	S	G	L	.	M	A	D	R	L	V	K	M	L	G	L
Query Conservation									.	.	.	.	.														.	.	.											.
Alig confidence									.	.	.	.	.														.	.	.											.
Template Conservation
Template Sequence		R	L	I	I	N	E	A	D	R	T	C	K	G	V	T	V	V	T	A	A	G	N	E	L	N	F	F	A	D	R	E	V	I	L	S	Q	G	V	F	E	T	P	K	L	L	M	L	S	G	I
Template Known Secondary structure							T	T	T	T										T	T	S																											T	T
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions