Job Description P37339 Confidence 99.37% Date Thu Jan 5 11:55:20 GMT 2012 Rank 141 Aligned Residues 189 % Identity 15% Template c3p1wA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:rabgdi protein; PDBTitle: crystal structure of rab gdi from plasmodium falciparum, pfl2060c Resolution 1.85 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50																									.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	D	F	V	I	I	G	G	G	I	I	G	M	S	T	A	M	Q	L	I	D	V	Y	P	D	A	R	I	A	L	L	E	K	E	S	A	P	A	C	H	Q	T	G	H	N	S	G	V	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	A	G	V	Y	Y	T
Query Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.
Template Sequence		Y	D	V	I	I	L	G	T	G	L	K	E	C	I	L	S	G	L	L	S	H	Y	.	.	G	K	K	I	L	V	L	D	R	N	P	Y	Y	G	G	E	T	A	S	L	N	L	T	N	L	Y	N	T	F	K	P	K	E	N	I	P	S	K	Y	G	E	N	R	H	W	N	V	D	L	I	P	K	F	I	L	V
Template Known Secondary structure										S													T	.	.	T								S	S	S	S	S		G	G	G														T	T	S				G	G	G			G	G	G					S	S			B			T
Template Predicted Secondary structure																								.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.			.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		58	.	60	.	.	.	.	.	.																																																						.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	G	S	L	K	A	Q	F	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	G	N	R	A	T	K	A	F	C	D	Q	N	G	I	R	Y
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	G	N	L	V	K	I	L	K	K	T	R	V	T	N	Y	L	E	W	L	V	V	E	G	S	Y	V	Y	Q	H	Q	K	K	G	F	L	T	S	E	K	F	I	H	K	V	P	A	T	D	M	E	A	L	V	S	P	L	L	S	L	M	E	K	N	R	C	K	N	F	Y	Q	Y	V	S	E	W	D	A	N	K
Template Known Secondary structure		T	S									T	T		G	G	G	S						S												S	S	S											S						T		T	T	S																				T	T
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.													.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.						.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.
Query Sequence		D	N	C	G	K	M	L	V	A	T	S	D	L	E	M	E	R	M	R	A	L	W	E	R	T	A	A	.	.	.	.	.	.	.	.	.	.	.	.	N	G	I	E	R	E	W	L	N	A	D	E	L	R	E	R	E	P	N	I	T	.	.	.	.	.	G	L	G	G	I	F	V	P	S	S	G	I	V	S	Y
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.													.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		R	N	T	W	D	N	L	D	P	Y	K	L	T	M	L	E	I	Y	K	H	F	N	L	C	Q	L	T	I	D	F	L	G	H	A	V	A	L	Y	L	N	D	D	Y	L	K	Q	P	A	Y	L	T	L	E	R	I	K	L	Y	M	Q	S	I	S	A	F	G	K	S	P	F	I	Y	P	L	Y	G	L	.	.	.
Template Known Secondary structure		G	G	G	S	T	T			T	T	T	S	B								T	T													T	S			S	S	S	G	G	G	G	S	B																			S	S		S					T	T		T	.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180			.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.
Query SS confidence																																			.	.
Query Sequence		R	D	V	T	A	A	M	A	K	I	F	Q	S	R	G	G	E	I	I	Y	N	A	E	V	S	G	L	N	E	H	K	N	G	.	.	V	V	I	R	T	R	Q	G	G	E	Y	E	A	S	T	L	I
Query Conservation																																			.	.
Alig confidence														.	.																				.	.
Template Conservation														.	.
Template Sequence		G	G	I	P	E	G	F	S	R	M	C	A	.	.	I	N	T	F	M	L	N	K	N	V	V	D	F	V	F	D	D	D	N	K	V	C	G	I	K	S	S	D	G	E	I	A	Y	C	D	K	V	I
Template Known Secondary structure		T												.	.						S	S										T	T	S								T	T	S
Template Predicted Secondary structure														.	.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.			.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions