Job Description P37339 Confidence 99.47% Date Thu Jan 5 11:55:20 GMT 2012 Rank 107 Aligned Residues 175 % Identity 15% Template c3nlcA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein vp0956; PDBTitle: crystal structure of the vp0956 protein from vibrio parahaemolyticus.2 northeast structural genomics consortium target vpr147 Resolution 2.15 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	V	I	I	G	G	G	I	I	G	M	S	T	A	M	Q	L	I	D	V	Y	P	D	A	R	I	A	L	L	E	K	E	S	A	P	A	C	H	Q	T	G	H	N	S	G	V	I	H	A	G	V	Y	Y	T	P	G	S	L	K	A	Q	F	C	L	A	G	N	R	A	T	K	A	F	C	D	Q	N	G	I
Query Conservation
Alig confidence																							.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	P	I	V	I	G	F	G	P	C	G	L	F	A	G	L	V	L	A	Q	X	.	.	G	F	N	P	I	I	V	E	R	G	K	E	V	R	E	R	T	K	D	T	F	G	F	W	R	K	R	T	L	N	P	E	S	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	Q	F	G	E	G	G
Template Known Secondary structure									S													T	.	.	T								S	S																					T	T	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S	S	T	T	G
Template Predicted Secondary structure																							.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.			120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.																	.	.	.	.	.	.	160
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Y	D	N	C	G	K	M	L	V	A	T	S	D	L	E	M	E	R	M	R	A	L	W	E	R	T	A	A	N	G	I	E	R	E	W	L	N	A	D	E	L	R	E	R	E	P	N	I	T	G	L	G	G	I	F	V	P	S	S	G	I	V	S	Y	R	D	V	T	A	A	M	A	K	I	F	Q	S	R	G
Query Conservation
Alig confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	G	T	F	S	D	G	K	L	Y	S	Q	V	K	D	P	N	F	Y	G	R	K	V	I	T	E	F	V	E	A	G	A	P	E	E	I	L	Y	V	S	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	H	I	G	T	F	K	L	V	T	X	I	E	K	X	R	A	T	I	I	E	L	G
Template Known Secondary structure		G	G	T	T	S								S			T	T													T	T			G	G	G	G	T	B	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						T	T
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.																	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.		.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		G	E	I	I	Y	N	A	E	V	S	G	L	N	E	H	K	N	G	V	V	.	I	R	T	R	Q	G	G	E	Y	E	A	S	T	L	I	S	C	S	G	L	M	A	D	R	L	V	K	M	L
Query Conservation																						.
Alig confidence																						.
Template Conservation
Template Sequence		G	E	I	R	F	S	T	R	V	D	D	L	H	X	E	D	G	Q	I	T	G	V	T	L	S	N	G	E	E	I	K	S	R	H	V	V	L	A	V	G	H	S	A	R	D	T	F	E	X	L
Template Known Secondary structure						S	S									S	S	S	B							T	T	S						S								T	T
Template Predicted Secondary structure
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions