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Job DescriptionP37339
Confidence99.87%DateThu Jan 5 11:55:20 GMT 2012
Rank24Aligned Residues354
% Identity14%Templatec3ka7A_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:oxidoreductase; PDBTitle: crystal structure of an oxidoreductase from methanosarcina2 mazei. northeast structural genomics consortium target id3 mar208
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30.........40.........50.....
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Query Sequence  FVIIGGGIIGMSTAMQLIDVYPDARIALLEKESAPACHQTGHNSGVIHAGVY. . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  TVVIGAGLGGLLSAARLSKA. . GHEVEVFERLPITGGRFTNLSYKGFQLSSGAFHXLPNGPGGPLACFLKEVEASVNIVR
Template Known Secondary structure 

BT..T

SSSSSBTTSSTTSSS
S
BTTGGGSTT



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   3......10.........20.. .......30.........40.........50.........60.........70.........80
 
   56...60.........70.........80.........90.........100.........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . YTPGSLKAQFCLAGNRATKAFCDQNGIRYDNCGKMLVATSDLEMERMRALWERT
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Template Sequence  SEXTTVRVPLKKGNPDYVKGFKDISFNDFPSLLSYKDRXKIALLIVSTRKNRPSGSSLQAWIKSQVSDEWLIKFADSFCG
Template Known Secondary structure 



SSTT

SSTT
GGGGGGGS
TTTS


SSB


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   81........90.........100.........110.........120.........130.........140.........150.........160
 
   110.........120.........130.........140.........150.........160.........170.........180.........
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Query Sequence  AANGIEREWLNADELREREPNITGLGGIFVPSSGIVSYRDVTAAMAKIFQSRGGEIIYNAEVSGLNEHKNGVVIRTRQGG
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Template Sequence  WALSLKSDEVPVEEVFEIIENXYRFGGTGIPEGG. . . CKGIIDALETVISANGGKIHTGQEVSKILIENGKAAGIIADDR
Template Known Secondary structure  SS
GGGSB
S
TTS...TT

S

TTTT
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   161........170.........180.........190.... .....200.........210.........220.........230.......
 
   190.........200.........210......... 220.........230.........240.........250.........260
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Query Sequence  EYEASTLISCSGLMADRLVKMLGLEPGFII. . . . . . . . . CPFRGEYFRLAPEHNQIVNHLIYPIPDPAMPFLGVHLTRMI
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Template Sequence  IHDADLVISNLGHAATAVLCSEALSKEADAAYFKXVGTLQPSAGIKICLAADEPLVGHTGVLLTPYTRR. . . . . . . . . . .
Template Known Secondary structure 
S
S
TTTT

TTTT


BSS
SS
SSS

SSSS...........
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   238.240.........250.........260.........270.........280.........290.........300......
 
   261........270.........280.........290.........300.........310.........320.........330.........340
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Query Sequence  DGSVTVGPNAVLAFKREGYRKRDFSFSDTLEILGSSGIRRVLQNHLRSGLGEMKNSLCKSGYLRLVQKYCPRLSLSDLQP
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Template Sequence  . . . . . . . . . . . . . . . . . . . INGVNEVTQADPELAPPGKHLTXCHQYVAPENVKNLESEIEXGLEDLKEIFPGKRYEVLLI
Template Known Secondary structure  ...................
GGGT
GGGS
TT

GGGGGGSTT

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   307..310.........320.........330.........340.........350.........360.......
 
   341........350.........360.........370... ......380.........390.....
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Query Sequence  WPAGVRAQAVSPDGKLIDDFLFVTTPRTIHTCN. . . APSPAATSAIPIGAHIVSKVQT
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Template Sequence  QSYHDEWPVNRAASGTDPGNE. TPFSGLYVV. GDGAKGKGGI. EVEGVALGVXSVXEK
Template Known Secondary structure  BTTB
SBSS
TT



SB.
SSBT
.STTS

TT

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   368.370.........380........ .390....... ..400....... ..410.........420..
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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