Job Description P37339 Confidence 99.42% Date Thu Jan 5 11:55:20 GMT 2012 Rank 125 Aligned Residues 332 % Identity 14% Template c3ihgA_ PDB info PDB header:flavoprotein, oxidoreductase Chain: A: PDB Molecule:rdme; PDBTitle: crystal structure of a ternary complex of aklavinone-112 hydroxylase with fad and aklavinone Resolution 2.49 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	D	F	V	I	I	G	G	G	I	I	G	M	S	T	A	M	Q	L	I	D	V	Y	P	D	A	R	I	A	L	L	E	K	E	S	A	P	A	C	H	Q	T	G	H	N	S	G	V	I	H	A	G	V	Y	Y	T	P	G	S	L	K	A	Q	F	C	L	A	G	N	R	A	T	K	A	F	C	D	Q	N	G
Query Conservation
Alig confidence																								.	.															.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.															.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	D	V	L	V	V	G	A	G	L	G	G	L	S	T	A	M	F	L	A	R	Q	.	.	G	V	R	V	L	V	V	E	R	R	P	G	L	S	.	.	.	.	.	.	.	.	.	.	.	.	P	Y	P	R	A	A	G	Q	N	P	R	T	M	E	L	L	R	I	G	G	V	A	D	E	V	V	R	A	D	D
Template Known Secondary structure										S												T	T	.	.	T								S	S	S	S			.	.	.	.	.	.	.	.	.	.	.	.					S			B											T	T								S
Template Predicted Secondary structure																								.	.															.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.													.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	Y	D	N	C	G	K	M	L	V	A	T	S	D	L	E	M	E	R	M	R	A	L	W	E	R	T	A	A	N	G	I	E	R	E	W	L	N	A	D	E	L	R	E	R	E	P	N	I	T	G	L	G	G	I	F	V	P	S	S	G	I	V	S	Y	R	D	V	T	A	A	M	A	K	I	F	Q	S	R
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.
Template Sequence		I	R	G	T	Q	G	D	F	V	I	R	L	A	E	S	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	E	I	L	R	T	V	S	E	S	F	D	D	M	V	A	A	T	E	P	C	T	.	.	.	.	P	A	G	W	A	M	L	S	Q	D	K	L	E	P	I	L	L	A	Q	A	R	K	H
Template Known Secondary structure		S	S		T	T	S								S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S								S								T	T	G	G	G		.	.	.	.	S				B																		T
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.															.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110					.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.								180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.
Query Sequence		G	G	E	I	I	Y	N	A	E	V	S	G	L	N	E	H	K	N	.	.	.	.	.	.	.	G	V	V	I	R	T	R	Q	G	G	E	Y	E	A	S	T	L	I	S	C	S	G	L	M	A	D	R	L	V	K	M	L	G	L	E	P	G	F	I	I	C	P	F	R	G	E	Y	F	R	L	A	P	E	H	N
Query Conservation																				.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.																										.
Template Conservation																																																				.
Template Sequence		G	G	A	I	R	F	G	T	R	L	L	S	F	R	Q	H	D	D	D	A	G	A	G	V	T	A	R	L	A	G	P	D	G	E	Y	D	L	R	A	G	Y	L	V	G	A	D	G	N	R	S	.	L	V	R	E	S	L	G	I	G	R	Y	G	H	G	T	L	T	H	M	V	G	V	I	F	D	A	D	L	S
Template Known Secondary structure		T					S	S											G	G	G		S									T	T																T	T		.						T	T																					G	G
Template Predicted Secondary structure																																																				.
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.		.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	I	V	N	H	L	I	Y	P	I	P	D	P	A	M	P	F	L	G	V	H	L	T	R	M	I	D	G	S	V	T	V	G	P	N	A	V	L	A	F	K	R	E	G	Y	R	K	R	D	F	S	F	S	D	T	L	E	I	L	G	S	S	G	I	R	R	V	L	Q	N	H	L	R	S	G	L	G	E	M	K
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	I	M	E	P	G	T	T	G	W	Y	Y	L	H	H	P	E	F	K	G	T	F	G	P	T	D	R	P	D	R	H	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	F	V	E	Y	D	P	D	E	G	E	R	P	E	D	F	T
Template Known Secondary structure		G	T	S		T	T										S	S									S	S	T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T	T	T			G	G	G
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.																																.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.			.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure																																											.	.
Query SS confidence																																											.	.
Query Sequence		N	S	L	C	K	S	G	Y	L	R	L	V	Q	K	Y	C	P	R	L	S	L	S	D	L	Q	P	W	P	A	G	V	R	A	Q	A	V	S	P	D	G	K	.	.	L	I	D	D	F	L	F	V	T	T	P	R	T	I	H	T	C	N	A	P	S	P	A	A	T	S	A	I	P	I	G	A	H	I	V	S	K
Query Conservation																																											.	.
Alig confidence																																											.	.												.	.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.	.
Template Sequence		P	Q	R	C	V	E	L	I	G	L	A	L	D	A	P	E	V	K	P	E	L	V	D	I	Q	G	W	E	M	A	A	R	I	A	E	R	W	R	E	G	R	V	F	L	A	G	D	A	A	K	V	T	P	P	.	.	.	.	.	.	.	T	G	G	M	S	G	N	A	A	V	A	D	G	F	D	L	A	W	K
Template Known Secondary structure														T		S	S																			S		S			T	T					T	T	T	T					S	.	.	.	.	.	.	.	T	T	S
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.								.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
		393	.	.	.	.	.	.	400	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q	T	L	L	A	S	Q	S	N	P	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	A	V	L	Q	G	Q	A	G	A	G
Template Known Secondary structure							T	T	S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		335	.	.	.	.	340	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions