Job Description P37339 Confidence 100.00% Date Thu Jan 5 11:55:20 GMT 2012 Rank 2 Aligned Residues 351 % Identity 25% Template c3dmeB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved exported protein; PDBTitle: crystal structure of conserved exported protein from2 bordetella pertussis. northeast structural genomics target3 ber141 Resolution 1.70 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	D	F	V	I	I	G	G	G	I	I	G	M	S	T	A	M	Q	L	I	D	V	Y	P	D	A	R	I	A	L	L	E	K	E	S	A	P	A	C	H	Q	T	G	H	N	S	G	V	I	H	A	G	V	Y	Y	T	P	G	S	L	K	A	Q	F	C	L	A	G	N	R	A	T	K	A	F	C	D	Q	N	G
Query Conservation
Alig confidence																								.	.
Template Conservation																								.	.
Template Sequence		I	D	C	I	V	I	G	A	G	V	V	G	L	A	I	A	R	A	L	A	A	G	.	.	G	H	E	V	L	V	A	E	A	A	E	G	I	G	T	G	T	S	S	R	N	S	E	V	I	H	A	G	I	Y	Y	P	A	D	S	L	K	A	R	L	C	V	R	G	K	H	L	L	Y	E	Y	C	A	A	R	G
Template Known Secondary structure										S													T	.	.	T								S	S	S	S	T	T		S	G	G	G	S	S									S	S		T	T																						T
Template Predicted Secondary structure																								.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.			.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.		.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																																.
Query SS confidence																																.
Query Sequence		I	R	Y	D	N	C	G	K	M	L	V	A	T	S	D	L	E	M	E	R	M	R	A	L	W	E	R	T	A	A	.	N	G	I	E	R	E	W	L	N	A	D	E	L	R	E	R	E	P	N	I	T	G	L	G	G	I	F	V	P	S	S	G	I	V	S	Y	R	D	V	T	A	A	M	A	K	I	F	Q	S
Query Conservation																																.
Alig confidence																																.
Template Conservation
Template Sequence		V	P	H	Q	R	L	G	K	L	I	V	A	T	S	D	A	E	A	S	Q	L	D	S	I	A	R	R	A	G	A	N	G	V	D	D	L	Q	H	I	D	G	A	A	A	R	R	L	E	P	A	L	H	C	T	A	A	L	V	S	P	S	T	G	I	V	D	S	H	A	L	M	L	A	Y	Q	G	D	A	E	S
Template Known Secondary structure															S					T	T											T	T																	T	T				S						T	T
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.				.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.				.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure																												.	.	.																															.	.	.
Query SS confidence																												.	.	.																															.	.	.
Query Sequence		R	G	G	E	I	I	Y	N	A	E	V	S	G	L	N	E	H	K	N	G	V	V	I	R	T	R	.	.	.	Q	G	G	E	Y	E	A	S	T	L	I	S	C	S	G	L	M	A	D	R	L	V	K	M	L	G	L	E	P	G	.	.	.	F	I	I	C	P	F	R	G	E	Y	F	R	L	A	P	E	H	N
Query Conservation																												.	.	.																															.	.	.
Alig confidence																												.	.	.																															.	.	.
Template Conservation
Template Sequence		D	G	A	Q	L	V	F	H	T	P	L	I	A	G	R	V	R	P	E	G	G	F	E	L	D	F	G	G	A	E	P	M	T	L	S	C	R	V	L	I	N	A	A	G	L	H	A	P	G	L	A	R	R	I	E	G	I	P	R	D	S	I	P	P	E	Y	L	C	K	G	S	Y	F	T	L	A	G	R	A	P
Template Known Secondary structure		T	T						S										T	T	S	S							S	S	S														G	G	G							T			T	S		G	G	G	S															S	S		S
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	I	V	N	H	L	I	Y	P	I	P	D	P	A	M	P	F	L	G	V	H	L	T	R	M	I	D	G	S	V	T	V	G	P	N	A	V	L	A	F	K	R	E	G	Y	R	K	R	D	F	S	F	S	D	T	L	E	I	L	G	S	S	G	I	R	R	V	L	Q	N	H	L	R	S	G	L	G	E	M	K
Query Conservation
Alig confidence					.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	S	R	.	.	.	.	L	I	Y	P	V	P	Q	H	A	G	L	G	V	H	L	T	L	D	L	G	G	Q	A	K	F	G	P	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	E	W	I	A	T	E	D	Y	T	L
Template Known Secondary structure			S	S	.	.	.	.						T	T		S	S									T	T	S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	S
Template Predicted Secondary structure					.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		243	.	.					.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.																																			.	.	.	.	.	.	280	.	.	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.						.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.
Query Sequence		N	S	L	C	K	S	G	Y	L	R	L	V	Q	K	Y	C	P	R	L	S	L	S	D	L	Q	P	W	P	A	G	V	R	A	Q	A	V	S	P	D	G	K	L	I	D	D	F	L	F	V	T	T	.	.	.	.	.	P	R	T	I	H	T	C	N	A	P	S	P	A	A	T	S	A	I	P	I	G	A	H	I
Query Conservation																																																					.	.	.	.	.
Alig confidence																																			.																		.	.	.	.	.
Template Conservation																																			.
Template Sequence		D	P	R	R	A	D	V	F	Y	A	A	V	R	S	Y	W	P	A	L	P	D	G	A	L	A	P	G	Y	T	G	I	R	P	.	K	I	S	G	P	H	E	P	A	A	D	F	A	I	A	G	P	A	S	H	G	V	A	G	L	V	N	L	Y	G	I	E	S	P	G	L	T	A	S	L	A	I	A	E	E	T
Template Known Secondary structure			G	G	G	G	T	T							T	T		T	T			T	T												.		S	S		T	T	S																T	T									T	T
Template Predicted Secondary structure																																			.
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.		.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
		390	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	K	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	R	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		364	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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