Job Description P37339 Confidence 99.77% Date Thu Jan 5 11:55:20 GMT 2012 Rank 29 Aligned Residues 302 % Identity 18% Template c3atrA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:conserved archaeal protein; PDBTitle: geranylgeranyl reductase (ggr) from sulfolobus acidocaldarius co-2 crystallized with its ligand Resolution 1.80 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	D	F	V	I	I	G	G	G	I	I	G	M	S	T	A	M	Q	L	I	D	V	Y	P	D	A	R	I	A	L	L	E	K	E	S	A	P	A	C	H	Q	T	G	H	N	S	G	V	I	H	A	G	V	Y	Y	T	P	G	S	L	K	A	Q	F	C	L	A	G	N	R	A	T	K	A	F	C	D	Q	N	G
Query Conservation
Alig confidence																								.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	D	V	L	I	I	G	G	G	F	A	G	S	S	A	A	Y	Q	L	S	R	R	.	.	G	L	K	I	L	L	V	D	S	K	P	W	N	R	I	G	D	K	P	C	G	D	A	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	K	A	H	F	D	K	L	G
Template Known Secondary structure			S							S											S	S	S	.	.	S								S	S		G	G	G	T	T		S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T
Template Predicted Secondary structure																								.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.																								.	.	.	.	.	.	.	.	60
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	Y	D	N	C	G	K	M	L	V	A	T	S	D	L	E	M	E	R	M	R	A	L	W	E	R	T	A	A	N	G	I	E	R	E	W	L	N	A	D	E	L	R	E	R	E	P	N	I	T	G	L	G	G	I	F	V	P	S	S	G	I	V	S	Y	R	D	V	T	A	A	M	A	K	I	F	Q	S	R
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	P	Y	P	K	G	E	E	L	E	N	K	I	N	G	I	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Y	S	P	D	M	Q	T	V	W	T	V	N	G	E	G	F	E	L	N	A	P	L	Y	N	Q	R	V	L	K	E	A	Q	D	R
Template Known Secondary structure							G	G	G										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T	S	S																												T
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.																													.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.							.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.							.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.																														.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.																														.	.	.	.	.	.
Query Sequence		G	G	E	I	I	Y	N	A	E	V	S	G	L	N	E	H	K	N	G	V	V	I	R	T	.	.	.	.	.	.	R	Q	G	G	E	Y	E	A	S	T	L	I	S	C	S	G	L	M	A	D	R	L	V	K	M	L	G	L	E	.	.	.	.	.	.	P	G	F	I	I	C	P	F	R	G	E	Y	F	R	L
Query Conservation																										.	.	.	.	.	.																														.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.																				.										.	.	.	.	.	.
Template Conservation																																																			.
Template Sequence		G	V	E	I	W	D	L	T	T	A	M	K	P	I	F	E	D	G	Y	V	K	G	A	V	L	F	N	R	R	T	N	E	E	L	T	V	Y	S	K	V	V	V	E	A	T	G	Y	S	R	.	S	F	R	S	K	L	P	P	E	L	P	I	T	E	D	L	D	D	K	D	A	D	V	A	Y	R	E	V	L	L
Template Known Secondary structure		T					S	S										T	T										T	T	T	T								S							G	G	G		.	T	T	G	G	G	S		T	T	S	G	G	G					G	G	G
Template Predicted Secondary structure																																																			.
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.		.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	E	H	N	Q	I	V	N	H	L	I	Y	P	I	P	D	P	A	M	P	F	L	G	V	H	L	T	R	M	I	D	G	S	V	T	V	G	P	N	A	V	L	A	F	K	R	E	G	Y	R	K	R	D	F	S	F	S	D	T	L	E	I	L	G	S	S	G	I	R	R	V	L	Q	N	H	L	R	S	G
Query Conservation
Alig confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	K	E	D	I	E	D	H	D	Y	L	R	I	F	I	D	Q	E	T	S	P	G	G	Y	W	W	Y	F	P	K	G	K	N	K	V	N	V	G	L	G	I	Q	G	G	M	G	Y	P	S	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			S	S			T	T	T	T								T	T	T	S	T	T	S									T	T										S	S	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	E	M	K	N	S	L	C	K	S	G	Y	L	R	L	V	Q	K	Y	C	P	R	L	S	L	S	D	L	Q	P	W	P	A	G	V	R	A	Q	A	V	S	P	D	G	K	L	I	D	D	F	L	F	V	T	T	P	R	T	I	H	T	C	N	A	P	S	P	A	A	T	S	A	I	P	I	G	A	H	I
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.																														.
Template Conservation		.	.	.	.	.	.	.	.	.																														.
Template Sequence		.	.	.	.	.	.	.	.	.	H	E	Y	Y	K	K	Y	L	D	K	Y	A	P	D	V	D	K	S	K	L	L	V	K	G	G	A	L	V	P	.	T	R	R	P	L	Y	T	M	A	W	N	G	I	I	V	I	G	D	S	G	F	T	V	N	P	V	H	G	G	G	K	G	S	A	M	I	S	G	Y	C	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.													T	T																.		S	S			S		S			T	T					G	G	G	G	T		S		T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																														.
Template SS confidence
											242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	K	V	Q	T	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	K	A	I	L	S	A	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		312	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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