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Job DescriptionP37339
Confidence99.55%DateThu Jan 5 11:55:20 GMT 2012
Rank78Aligned Residues195
% Identity11%Templatec1zkqA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:thioredoxin reductase 2, mitochondrial; PDBTitle: crystal structure of mouse thioredoxin reductase type 2
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
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Query Sequence  YDFVIIGGGIIGMSTAMQLIDVYPDARIALLEKESAPACHQTGHNSGVIHAGVYYTPGSLKAQFCLAGNRATKAFCDQNG
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Template Sequence  FDLLVIGGGSGGLACAKEAAQL. . GKKVAVADYVEPSPRGTKWGLGGTCV. . . NVGCIPKKLMHQAALLGGMIRDAHHYG
Template Known Secondary structure 

ST..T







TT




SS...STT
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   40.........50.........60. ........70.........80....... ..90.........100.........110....
 
   82.......90.........100.........110..
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Query Sequence  IRYDNCGKMLVATSDLEMERMRALWERTAAN. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  WEVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRY
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S




TT


B

BSSSS
B
TT








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   115....120.........130.........140.........150.........160.........170.........180.........190....
 
   113......120.........130.........140.........150.........160....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . GIEREWLNADELREREPNITGLGGIFVPSSGIVSYRDVTAAMAKIFQSRGGE
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Template Sequence  PTQVKGALEYGITSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTVMMRSIPLRGFDQQMSSLVTEHMESHGTQ
Template Known Secondary structure 
TT
BT
B
TT
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S

STT

SS
SSTTS
TTT
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   195....200.........210.........220.........230.........240.........250.........260.........270....
 
   165....170.........180..... ....190.........200.
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Query Sequence  IIYNAEVSGLNEHKNGVVIRT. . . . . . RQGGEYEASTLISCSG
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Template Sequence  FLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIG
Template Known Secondary structure  T
TTS
TTSSS
S
S
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   275....280.........290.........300.........310.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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