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Job DescriptionP37339
Confidence99.29%DateThu Jan 5 11:55:20 GMT 2012
Rank161Aligned Residues219
% Identity16%Templatec1x31A_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:sarcosine oxidase alpha subunit; PDBTitle: crystal structure of heterotetrameric sarcosine oxidase from2 corynebacterium sp. u-96
Resolution2.15 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
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Query Sequence  YDFVIIGGGIIGMSTAMQLIDVYPDARIALLEKESAPACHQTGHNSGVIHAGVYYTPGSLKAQFCLAGNRATKAFCDQNG
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Template Sequence  TDVLVVGAGPAGLAAAREASRS. . GARVMLLDERPEA. GGTLREASGEQIDGID. . . . . . . . . AAQWIDAVTEELAAAEE
Template Known Secondary structure 

ST..T


SSSSS.
GGGGG

S
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TT
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   128.130.........140......... 150.........160.. .......170........ .180.........190.....
 
   82.......90.........100.........110..... ....120.....
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Query Sequence  IRYDNCGKMLVATSDLEMERMRALWERTAANGIE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . REWLNADELR
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Template Sequence  TTHLQRTTVFGSYDANYILAAQRRTVHLDGPSGQGVSRERIWHIRAKQVVLATAAHERPIVFENNDRPGIMLAGSVRSYL
Template Known Secondary structure  SSTTT
STT
SS


TT

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BTTTSTT
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   196...200.........210.........220.........230.........240.........250.........260.........270.....
 
   126...130.........140.. .......150.........160.........170.........180......
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Query Sequence  EREPNITGLGGIFVPSS. . . . . . . . . . . . . . . . . GIVSYRDVTAAMAKIFQSRGGEIIYNAEVSGLNEHKNGVVIRTR. .
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Template Sequence  NRFGVRAGSKIAVATTNDSVYPLVSELAASGGVVAVIDARQNISAAAAQAVTDGVTVLTGSVVANTEADASGELSAVLVA
Template Known Secondary structure 
S
SSSSGGGGGGT

S
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TT

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   276...280.........290.........300.........310.........320.........330.........340.........350.....
 
   187..190.........200... ......210.........220.........230....
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Query Sequence  . . . . . . . . . QGGEYEASTLISCSGLM. ADRLVKMLGLEPGFIICPFRGEYFRLAPEHN
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Template Sequence  TLDEQRNLGEAQRFEADVLAVSGGFNPVVHLHSQRQG. . KLNWDTSIHAFVPADAVAN
Template Known Secondary structure  B
TT

B



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   356...360.........370.........380.........390.. .......400.........410.
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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