Job Description P37339 Confidence 99.44% Date Thu Jan 5 11:55:20 GMT 2012 Rank 116 Aligned Residues 187 % Identity 23% Template c1ojtA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:surface protein; PDBTitle: structure of dihydrolipoamide dehydrogenase Resolution 2.75 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	D	F	V	I	I	G	G	G	I	I	G	M	S	T	A	M	Q	L	I	D	V	Y	P	D	A	R	I	A	L	L	E	K	E	S	A	P	A	C	H	Q	T	G	H	N	S	G	V	I	H	A	G	V	Y	Y	T	P	G	S	L	K	A	Q	F	C	L	A	G	N	R	A	T	K	A	F	C	D	Q	N	G
Query Conservation
Alig confidence																								.	.																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.																			.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	D	V	V	V	L	G	G	G	P	G	G	Y	S	A	A	F	A	A	A	D	E	.	.	G	L	K	V	A	I	V	E	R	Y	K	T	L	G	G	V	C	L	.	.	.	.	.	.	.	.	.	.	.	N	V	G	C	I	P	S	K	A	L	L	H	N	A	A	V	I	D	E	V	R	H	L	A	A	N	G
Template Known Secondary structure										S													T	.	.	T								S	S	S		S	S					.	.	.	.	.	.	.	.	.	.	.			S																				G	G	G	G	T
Template Predicted Secondary structure																								.	.																			.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.			.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.												.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	R	Y	D	N	C	G	K	M	L	V	A	T	S	D	L	E	M	E	R	M	R	A	L	W	E	R	T	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	K	Y	P	E	P	E	L	D	I	D	M	L	R	A	Y	K	D	G	V	V	S	R	L	T	G	G	L	A	G	M	A	K	S	R	K	V	D	V	I	Q	G	D	G	Q	F	L	D	P	H	H	L	E	V	S	L	T	A	G	D	A	Y	E	Q	A	A	P	T	G	E	K	K	I	V	A	F	K	N	C	I
Template Known Secondary structure																																				T	T													T	T												T	T
Template Predicted Secondary structure
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
										111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.																												.	.	150	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	A	N	G	I	E	R	E	W	L	N	A	D	E	L	R	E	R	E	P	N	I	T	G	L	G	G	I	F	V	P	S	S	G	I	V	S	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	D	V	T	A	A	M	A
Query Conservation		.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	A	A	G	S	R	V	T	K	L	P	F	I	P	E	D	P	R	I	I	D	S	S	G	A	L	A	L	K	E	V	P	G	K	L	L	I	I	G	G	G	I	I	G	L	E	M	G	T	V	Y	S	T	L	G	S	R	L	D	V	V	E	M	M	D	G	L	M	Q	G	A	D	R	D	L	V	K	V	W	Q
Template Known Secondary structure												S	S					T	T								T	T						S						S		S														T								S	S	S	S	S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.					.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure																																			.	.	.	.
Query SS confidence																																			.	.	.	.
Query Sequence		K	I	F	Q	S	R	G	G	E	I	I	Y	N	A	E	V	S	G	L	N	E	H	K	N	G	V	V	I	R	T	R	Q	G	.	.	.	.	G	E	Y	E	A	S	T	L	I	S	C	S	G
Query Conservation																																			.	.	.	.
Alig confidence																																			.	.	.	.
Template Conservation
Template Sequence		K	Q	N	E	Y	R	F	D	N	I	M	V	N	T	K	T	V	A	V	E	P	K	E	D	G	V	Y	V	T	F	E	G	A	N	A	P	K	E	P	Q	R	Y	D	A	V	L	V	A	A	G
Template Known Secondary structure					G	G	G							S										T	T								S	S	S			S	S					S
Template Predicted Secondary structure
Template SS confidence
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions