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Job DescriptionP37339
Confidence99.31%DateThu Jan 5 11:55:20 GMT 2012
Rank152Aligned Residues184
% Identity13%Templatec1lvlA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: the refined structure of pseudomonas putida lipoamide dehydrogenase2 complexed with nad+ at 2.45 angstroms resolution
Resolution2.45 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
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Query Sequence  YDFVIIGGGIIGMSTAMQLIDVYPDARIALLEKESAPACHQTGHNSGVIHAGVYYTPGSLKAQFCLAGNRATKAFCDQNG
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Template Sequence  TTLLIIGGGPGGYVAAIRAGQL. . GIPTVLVEGQALGGT. . . . . . . . . . . . . . CLNIGCIPSKALIHVAEQFHQASRFTE
Template Known Secondary structure 
S

S..T


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TT..............STTS
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   6...10.........20....... ..30.........40.. .......50.........60.........
 
   82.......90.........100.........110..
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Query Sequence  IRYDNCGKMLVATSDLEMERMRALWERTAAN. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  PSPLGISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEVDGQRIQCEHLLLATGSSSVEL
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TT









TT

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TTTT
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B
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   70.........80.........90.........100.........110.........120.........130.........140.........
 
   113......120.........130.........140.........150... ......160.....
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Query Sequence  . . . GIEREWLNADELREREPNITGLGGIFVPSSGIVSYRDVTAA. . . . . . . . . . . . . . . . . . . . . . . . MAKIFQSRGGEI
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Template Sequence  PMLPLGGPVISSTEALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGIAL
Template Known Secondary structure  TTB

BTT
T

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ST

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T
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   150.........160.........170.........180.........190.........200.........210.........220.........
 
   166...170.........180.........190.........200.
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Query Sequence  IYNAEVSGLNEHKNGVVIRTRQGGEYEASTLISCSG
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Template Sequence  HLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVG
Template Known Secondary structure  TT
TT
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   230.........240.........250.........260.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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