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Job DescriptionP37339
Confidence99.81%DateThu Jan 5 11:55:20 GMT 2012
Rank26Aligned Residues354
% Identity12%Templatec1ltxR_
PDB info PDB header:transferase/protein bindingChain: R: PDB Molecule:rab escort protein 1; PDBTitle: structure of rab escort protein-1 in complex with rab2 geranylgeranyl transferase and isoprenoid
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40....
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Query Sequence  YDFVIIGGGIIGMSTAMQLIDVYPDARIALLEKESAPACHQTG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  FDVIVIGTGLPESIIAAACSRS. . GQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQENTENSMWQEQILENEEAIPLSS
Template Known Secondary structure 
S

ST..T


SSSSS
GGG

TTT






GGGGS
TTB
S
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   910.........20.........30 .........40.........50.........60.........70.........80......
 
   45....50.........60.........70.........80.........90...
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . HNSGVIHAGVYYTPGSLKAQFCLAGNRATKAFCDQNGIRYDNCGKMLVA
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Template Sequence  KDKTIQHVEVFCYASQDKNRITYSQIIKEGRRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTVEQV
Template Known Secondary structure  S



STT





TGGG

SS


TTSTGGGG

TT
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   91........100.........110.........120.........130.........140.........150.........160.........170
 
   94.....100.. .......110.........120......
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Query Sequence  TSDLEMERM. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RALWERTAANGIEREWLNADELRE
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Template Conservation 
           
       
                       
    
                              
Template Sequence  PCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEEHPDEYRAYEGTTFSEYLKTQKLTPNLQYFVLHSIAMTSTSCTVDGLK
Template Known Secondary structure 

S
SSS
TTGGG
GGGTGGGTTSBSS

TTTS




B
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   272.......280.........290.........300.........310.........320.........330.........340.........350.
 
   127..130.........140..... ....150.........160.........170...... ...180.. .......190.........200
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Query Sequence  REPNITGLGGIFVPSSGIV. . . SYRDVTAAMAKIFQSRGGEIIYNAEVSGLNE. . HKNGVV. IRTRQGGEYEASTLISCS
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Template Conservation                       

   
   
   
   

 
 
   
  
           
    
    
  

 
 
Template Sequence  ATKKFLQCLGRYGNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIED
Template Known Secondary structure  TTTTSSSSSSTT
TTTT
TT

TTT

TT


SG
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   354.....360.........370.........380.........390.........400.........410.........420.........430...
 
   201........210.........220.........230........ .240.........250.........260.........270.......
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Query Sequence  GLMADRLVKMLGLEPGFIICPFRGEYFRLAPEHNQIVN. . . HLIYPIPDPAMPFLGVHLTRMIDGSVTVGPNAVLAFKRE
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Template Sequence  SYLSENTCS. . . . . . RVQYRQISRAVLITDGSVLKTDADQQVSILTVPAEEPGSFAVRVIE. . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  GGB
TTTTS......S


SS
SS

SS





SSS


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   434.....440.. .......450.........460.........470.........480........
 
   278.280.........290.........300.........310.........320.........330.........340.........350.......
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Query Sequence  GYRKRDFSFSDTLEILGSSGIRRVLQNHLRSGLGEMKNSLCKSGYLRLVQKYCPRLSLSDLQPWPAGVRAQAVSPDGKLI
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Template Sequence  . . . . . . . . . . . . . . . . LCSSTMTCMKGTYLVHLTCMSSKTAREDLERVVQKLFTPYTEIEEKPRLLWALYFNMRDSSDIS
Template Known Secondary structure  ................
GGGSSS
TT

SS



S






S

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   489490.........500.........510.........520.........530.........540.........550..
 
   358.360.........370... ......380.........390........
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Query Sequence  DDFLFVTTPRTIHTCN. APSPAATSAIPIGAHIVSKVQTLLA
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Template Sequence  RDCYNDLPSNVYVCSGPDSGLGNDNAVKQAETLFQQICPNED
Template Known Secondary structure  GGGSSS

TT



SSSSSSSS

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   559560.........570.........580.........590.........600
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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