Job Description P37339 Confidence 100.00% Date Thu Jan 5 11:55:20 GMT 2012 Rank 17 Aligned Residues 324 % Identity 15% Template c1kifE_ PDB info PDB header:flavoprotein Chain: E: PDB Molecule:d-amino acid oxidase; PDBTitle: d-amino acid oxidase from pig kidney Resolution 2.60 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.						.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.
Query Sequence		F	V	I	I	G	G	G	I	I	G	M	S	T	A	M	Q	L	I	D	V	Y	P	D	A	R	I	A	L	L	E	K	.	.	.	.	.	E	S	A	P	A	C	H	Q	T	G	H	N	S	G	V	I	H	A	G	V	Y	Y	T	P	G	S	L	K	A	Q	F	C	L	A	G	N	R	A	T	K	A	F	C	D
Query Conservation																																	.	.	.	.	.
Alig confidence																						.	.										.	.	.	.	.
Template Conservation																						.	.
Template Sequence		V	V	V	I	G	A	G	V	I	G	L	S	T	A	L	C	I	H	E	R	.	.	Y	H	S	V	L	Q	P	L	D	V	K	V	Y	A	D	R	F	T	P	F	T	T	T	D	V	A	A	G	L	W	Q	P	Y	T	S	E	P	S	N	P	Q	E	A	N	W	N	Q	Q	T	F	N	Y	L	L	S	H	I	G
Template Known Secondary structure								S														.	.		T	T	T	S	S	S								S			T	T	S	S	S	G	G	G	S			B					S	S			S	S	T															T	T	T	T
Template Predicted Secondary structure																						.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.			.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		79	80				.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure				.	.	.
Query SS confidence				.	.	.
Query Sequence		Q	N	.	.	.	G	I	R	Y	D	N	C	G	K	M	L	V	A	T	S	D	L	E	M	E	R	M	R	A	L	W	E	R	T	A	A	N	G	I	E	R	E	W	L	N	A	D	E	L	R	E	R	E	P	N	I	T	G	L	G	G	I	F	V	P	S	S	G	I	V	S	Y	R	D	V	T	A	A	M	A
Query Conservation				.	.	.
Alig confidence				.	.	.																				.	.	.	.	.	.	.																								.	.	.	.
Template Conservation																										.	.	.	.	.	.	.																								.	.	.	.
Template Sequence		S	P	N	A	A	N	M	G	L	T	P	V	S	G	Y	N	L	F	R	E	A	V	P	D	.	.	.	.	.	.	.	P	Y	W	K	D	M	V	L	G	F	R	K	L	T	P	R	E	L	D	M	F	P	D	.	.	.	.	Y	R	Y	G	W	F	N	T	S	L	I	L	E	G	R	K	Y	L	Q	W	L	T
Template Known Secondary structure		S	T	T	T	T	T	T	T											S	S					.	.	.	.	.	.	.		T	T	T	T	T	S												T	T	S	T	T	.	.	.	.
Template Predicted Secondary structure																										.	.	.	.	.	.	.																								.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.								.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.					.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	F	Q	S	R	G	G	E	I	I	Y	N	A	E	V	S	G	L	N	E	H	K	N	G	V	V	I	R	T	R	Q	G	G	E	Y	E	A	S	T	L	I	S	C	S	G	L	M	A	D	R	L	V	K	M	L	G	L	E	P	G	F	I	I	C	P	F	R	G	E	Y	F	R	L	A	P	E	H	N	Q
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.
Template Sequence		E	R	L	T	E	R	G	V	K	F	F	L	R	K	V	E	S	F	.	.	.	.	.	.	.	.	.	.	.	.	E	E	V	A	R	G	G	A	D	V	I	I	N	C	T	G	V	W	A	G	V	L	Q	P	.	.	.	.	.	.	D	P	L	L	Q	P	G	R	G	Q	I	I	K	V	D	A	P	W	L	K
Template Known Secondary structure							T	T												.	.	.	.	.	.	.	.	.	.	.	.						T	T		S							G	G	G					S		.	.	.	.	.	.		T	T														T	T
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.													.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.							.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	N	H	L	I	Y	P	I	P	D	P	A	M	P	F	L	G	V	H	L	T	R	M	I	D	G	S	V	T	V	G	P	N	A	V	L	A	F	K	R	E	G	Y	R	K	R	D	F	S	F	S	D	T	L	E	I	L	G	S	S	G	I	R	R	V	L	Q	N	H	L	R	S	G	L	G	E	M	K	N
Query Conservation
Alig confidence																.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	F	I	I	T	H	D	L	E	R	G	I	Y	N	.	.	.	.	S	P	Y	I	I	P	G	L	Q	A	V	T	L	G	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	Q	V	G	N	W	N	E	I	N	N
Template Known Secondary structure		S							T	T	T		T	T		.	.	.	.	S							S	S	S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T					S
Template Predicted Secondary structure																.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		212	.	.	.	.	.	.	.	220	.	.	.	.	.					.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.																																				.	.	.	.	.	.	.	.	250	.	.
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.				.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure																																									.	.	.
Query SS confidence																																									.	.	.
Query Sequence		S	L	C	K	S	G	Y	L	R	L	V	Q	K	Y	C	P	R	L	S	L	S	D	L	Q	P	W	P	A	G	V	R	A	Q	A	V	S	P	D	G	.	.	.	K	L	I	D	D	F	L	F	V	T	T	P	R	T	I	H	T	C	N	A	P	S	P	A	A	T	S	A	I	P	I	G	A	H	I	V	S	K
Query Conservation																																									.	.	.
Alig confidence																																		.	.						.	.	.								.
Template Conservation																																		.	.																.
Template Sequence		I	Q	D	H	N	T	I	W	E	G	C	C	R	L	E	P	T	L	K	D	A	K	I	V	G	E	Y	T	G	F	R	P	.	.	V	R	P	Q	V	R	L	E	R	E	Q	L	R	F	G	.	S	S	N	T	E	V	I	H	N	Y	G	H	G	G	Y	G	L	T	I	H	W	G	C	A	L	E	V	A	K	L
Template Known Secondary structure																S	G	G	G	G	G													.	.			S	S										S	S	.	S												G	G	G
Template Predicted Secondary structure																																		.	.																.
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.			.	.	.	.	.	290	.	.	.	.	.	.	.	.	.		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
		393	.	.	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q	T	L	L	A	S	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	G	K	V	L	E	E	R
Template Known Secondary structure									T
Template Predicted Secondary structure
Template SS confidence
		330	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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