Return to main results Retrieve Phyre Job Id

Job DescriptionP37339
Confidence99.48%DateThu Jan 5 11:55:20 GMT 2012
Rank103Aligned Residues199
% Identity19%Templatec1gv4A_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:programed cell death protein 8; PDBTitle: murine apoptosis-inducing factor (aif)
Resolution2.0 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.....
Predicted Secondary structure 

























..........................
Query SS confidence 





















































. . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  YDFVIIGGGIIGMSTAMQLIDVYPDARIALLEKESAPACHQTGHNSGVIHAGVY. . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation 


 


 

 
 
 
  

    
  
 


       


    
       ..........................
Alig confidence 





















































..........................
Template Conservation    






 


 

  
     
  
 


            
  
                                
Template Sequence  VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLQFRQWNGKERSIYFQPPSFY
Template Known Secondary structure  S
SSTT
SSSS

B
SGGGGTGGGS


TT

TTS
SBSS
GGG
Template Predicted Secondary structure 
















































Template SS confidence 















































































   131........140.........150.........160.........170.........180.........190.........200.........210
 
   56...60.........70.......
Predicted Secondary structure  ..........................................................



Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .





















Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . YTPGSLKAQFCLAGNRATKAFC
Query Conservation  ..........................................................         
            
Alig confidence  ..........................................................





















Template Conservation              

    
  
  

     
    
       





         
         
          
Template Sequence  VSAQDLPNIENGGVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFR
Template Known Secondary structure  B
GGGGGGSTT
S

TTTTTTS






TS
TT

S
Template Predicted Secondary structure 







































Template SS confidence 















































































   211........220.........230.........240.........250.........260.........270.........280.........290
 
   78.80.........90.........100.........110.........120.........130.........140.........150.......
Predicted Secondary structure 
























Query SS confidence 















































































Query Sequence  DQNGIRYDNCGKMLVATSDLEMERMRALWERTAANGIEREWLNADELREREPNITGLGGIFVPSSGIVSYRDVTAAMAKI
Query Conservation            
                                                                 
   
Alig confidence 






















































................








Template Conservation             
 


 
  
 
 
  
          



      
      ................     
   
Template Sequence  ALEKISREVKSITVIGGGFLGSELACALGRKSQASGIEVIQLFPEKGNMGKILPQ. . . . . . . . . . . . . . . . YLSNWTMEK
Template Known Secondary structure  TT
S

S


SSSSTTTTTS
................
Template Predicted Secondary structure 




















................
Template SS confidence 















































































   291........300.........310.........320.........330.........340..... ....350....
 
   158.160.........170.........180.........190.........200...... ...210......
Predicted Secondary structure 














.





Query SS confidence 
















































.









Query Sequence  FQSRGGEIIYNAEVSGLNEHKNGVVIRTRQGGEYEASTLISCSGLMADR. LVKMLGLEPG
Query Conservation      
  
     
  
        
         
  

 
 
  
  .
    
    
Alig confidence 
















































.









Template Conservation 
   

 
     
  
        
    
  
 

 

 
 
  

  

   

  
Template Sequence  VKREGVKVMPNAIVQSVGVSGGRLLIKLKDGRKVETDHIVTAVGLEPNVELAKTGGLEID
Template Known Secondary structure  TTT

S

TTTTS
S




TTT

B
Template Predicted Secondary structure 



















Template SS confidence 



























































   355....360.........370.........380.........390.........400.........410....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions