Job Description P37339 Confidence 99.61% Date Thu Jan 5 11:55:20 GMT 2012 Rank 68 Aligned Residues 196 % Identity 16% Template c1gndA_ PDB info PDB header:gtpase activation Chain: A: PDB Molecule:guanine nucleotide dissociation inhibitor; PDBTitle: guanine nucleotide dissociation inhibitor, alpha-isoform Resolution 1.81 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	D	F	V	I	I	G	G	G	I	I	G	M	S	T	A	M	Q	L	I	D	V	Y	P	D	A	R	I	A	L	L	E	K	E	S	A	P	A	C	H	Q	T	G	H	N	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.
Template Sequence		Y	D	V	I	V	L	G	T	G	L	T	E	C	I	L	S	G	I	M	S	V	N	.	.	G	K	K	V	L	H	M	D	R	N	P	Y	Y	G	G	E	S	S	S	I	T	P	L	E	E	L	Y	K	R	F	Q	L	L	E	G	P	P	E	T	M	G	R	G	R	D	W	N	V	D	L	I	P	K	F	L	M
Template Known Secondary structure			S							S													T	.	.	T								S	S	S	S	S		T	T	S					S								T	T			S				G	G	G			G	G	G					S	S			B
Template Predicted Secondary structure																								.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.			.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
																														49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.									.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	I	H	A	G	V	Y	Y	T	P	G	S	L	K	A	Q	F	C	.	.	.	.	.	.	.	.	L	A	G	N	R	A	T	K	A	F	C	D	Q	N	G	I	R	Y	D	N	C	G	K	M	L	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	N	G	Q	L	V	K	M	L	L	Y	T	E	V	T	R	Y	L	D	F	K	V	V	E	G	S	F	V	Y	K	G	G	K	I	Y	K	V	P	S	T	E	T	E	A	L	A	S	N	L	M	G	M	F	E	K	R	R	F	R	K	F	L	V	F	V	A	N	F	D	E	N	D	P	K	T	F	E	G	V	D
Template Known Secondary structure		T	T	S										T	G	G	G	S														T	T								S								S	S	S																				T	T		G	G	G	S		S
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.																		.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	T	S	D	L	E	M	E	R	M	R	A	L	W	E	R	T	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	G	I	E	R	E	W	L	N	A	D	E	L	R	E	R	E	P	N	I	T	G	L	G	G	I	F	V	P	S	S	G	I	V	S	Y	R	D	V	T	A	A	M	A
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.
Template Conservation																																																																						.	.	.
Template Sequence		P	Q	N	T	S	M	R	D	V	Y	R	K	F	D	L	G	Q	D	V	I	D	F	T	G	H	A	L	A	L	Y	R	T	D	D	Y	L	D	Q	P	C	L	E	T	I	N	R	I	K	L	Y	S	E	S	L	A	R	Y	G	K	S	P	Y	L	Y	P	L	Y	G	.	.	.	L	G	E	L	P	Q	G	F	A
Template Known Secondary structure		T	T	T	S	B								T	T													T	S			S	S	S	G	G	G	G	S	B	S													T			G	G	G			S					T	T		.	.	.	T	T
Template Predicted Secondary structure																																																																						.	.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230				.	.	.	.	.	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	F	Q	S	R	G	G	E	I	I	Y	N	A	E	V	S	G	L	N	E	H	K	N	G	V	V	I	R	T	R	Q	G	G	E	Y	E	A	S	T	L	I	S	C	S	G	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	S	A	I	Y	G	G	T	Y	M	L	N	K	P	V	D	D	I	I	M	E	N	G	K	V	V	G	V	K	S	E	G	E	V	A	R	C	K	Q	L	I	C	D	P	S	Y
Template Known Secondary structure								T					S	S									B	T	T	B							T	T				B		S						G	G	G
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions