Job Description P37339 Confidence 99.02% Date Thu Jan 5 11:55:20 GMT 2012 Rank 203 Aligned Residues 188 % Identity 14% Template c1djnB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:trimethylamine dehydrogenase; PDBTitle: structural and biochemical characterization of recombinant wild type2 trimethylamine dehydrogenase from methylophilus methylotrophus (sp.3 w3a1) Resolution 2.20 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	V	I	I	G	G	G	I	I	G	M	S	T	A	M	Q	L	I	D	V	Y	P	D	A	R	I	A	L	L	E	K	E	S	A	P	A	C	H	Q	T	G	H	N	S	G	V	I	H	A	G	V	Y	Y	T	P	G	S	L	K	A	Q	F	C	L	A	G	N	R	A	T	K	A	F	C	D	Q	N	G	I	R
Query Conservation
Alig confidence																						.	.															.	.	.	.	.	.	.	.
Template Conservation																						.	.															.	.	.	.	.	.	.	.
Template Sequence		V	L	I	V	G	A	G	P	S	G	S	E	A	A	R	V	L	M	E	S	.	.	G	Y	T	V	H	L	T	D	T	A	E	K	I	G	.	.	.	.	.	.	.	.	G	H	L	N	Q	V	A	A	L	P	G	L	G	E	W	S	Y	H	R	D	Y	R	E	T	Q	I	T	K	L	L	K	K	N	K	E	S
Template Known Secondary structure								S													T	.	.	T								S	S	S	S	T	T	.	.	.	.	.	.	.	.	T	T					T	T	S	T	T		G	G	G	G																T		T	T
Template Predicted Secondary structure																						.	.															.	.	.	.	.	.	.	.
Template SS confidence
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.			.	.	.	.	.	.	.	.	420	.	.	.	.	.									.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.																			.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	D	N	C	G	K	M	L	V	A	T	S	D	L	E	M	E	R	M	R	A	L	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	R	T	A	A	N	G	I	E	R	E	W	L	N	A	D	E	L	R	E	R	E	P	N	I	T	G	L	G	G	I	F	V	P	S	S	G	I	V
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	L	A	L	G	Q	K	P	M	T	A	D	D	V	L	Q	Y	G	A	D	K	V	I	I	A	T	G	A	R	W	N	T	D	G	T	N	C	L	T	H	D	P	I	P	G	A	D	A	S	L	P	D	Q	L	T	P	E	Q	V	M	D	G	K	K	K	I	G	K	R	V	V	I	L	N	A	D	T	Y	F	M
Template Known Secondary structure						S											T	S			S												S	S				T	T	T	S	S			T	T			T	T	S	T	T										T		S				S										S	S
Template Predicted Secondary structure
Template SS confidence
		462	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.
		146	.	.	.	150																												.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	Y	R	D	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	A	A	M	A	K	I	F	Q	S	R	G	G	E	I	I	Y	N	A	E	V	S	G	L	N	E	H	K	N	G	V	V	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	P	S	L	A	E	K	L	A	T	A	G	H	E	V	T	I	V	S	G	V	H	L	A	N	Y	M	H	F	T	L	E	Y	P	N	M	M	R	R	L	H	E	L	H	V	E	E	L	G	D	H	F	C	S	R	I	E	P	G	R	M	E	I	Y	N	I	W	G	D	G	S	K	R	T	Y	R	G	P	G	V
Template Known Secondary structure												T	T								S	S		T	T	T					T	T												T	T						S								T	T							T	T		S		S							T	T	S
Template Predicted Secondary structure
Template SS confidence
		542	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.
						184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	R	T	R	Q	G	G	E	Y	E	A	S	T	L	I	S	C	S	G
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.
Template Conservation
Template Sequence		S	P	R	D	A	N	T	S	H	R	W	I	E	F	D	S	L	V	L	V	T	G
Template Known Secondary structure			S	S												S						S
Template Predicted Secondary structure
Template SS confidence
		622	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions