Job Description P0A6A3 Confidence 82.72% Date Thu Jan 5 11:02:41 GMT 2012 Rank 70 Aligned Residues 277 % Identity 13% Template c2ychA_ PDB info PDB header:cell cycle Chain: A: PDB Molecule:competence protein pilm; PDBTitle: pilm-piln type iv pilus biogenesis complex Resolution 2.20 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	K	L	V	L	V	L	N	C	G	S	S	S	L	K	F	A	I	I	D	A	V	N	G	E	E	Y	L	S	G	L	A	E	C	F	H	L	P	E	A	R	I	K	W	K	M	D	G	N	K	Q	E	A	A	L	G	A	G	A	A	H	S	E	A	L	N	F	I	V	N	T	I	L	A	Q	K	P	E	L
Query Conservation
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	R	V	E	A	L	G	L	E	I	G	A	S	A	L	K	L	V	E	V	S	G	N	P	P	A	L	K	A	L	A	S	R	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	P	P	G	L	L	X	E	G	X	V	A	E	P	A	A	L	A	Q	E	I	K	E	L	L	L	E	A	R	T	R	K
Template Known Secondary structure													S	S									T	T	T	T										.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T	S			T	T			S																	T
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.															.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		S	A	Q	L	T	A	I	G	H	R	I	V	H	G	G	E	K	Y	T	S	S	V	V	I	D	E	S	V	I	Q	G	I	K	D	A	A	S	F	A	P	L	H	N	P	A	H	L	I	G	I	E	E	A	L	K	S	F	P	Q	L	K	D	K	N	V	A	V	F	D	T	A	F	H	Q	T	M	P	E	E	.
Query Conservation																																																																																	.
Alig confidence										.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Template Conservation										.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	Y	V	V	T	A	L	S	.	.	.	.	.	N	L	A	V	I	L	R	P	I	Q	V	P	K	X	P	L	K	E	X	E	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	V	R	W	E	A	E	R	Y	I	P	F	P	I	E	V	V	L	D	F	A	P	L	T	P	L	S	E	V	Q
Template Known Secondary structure										.	.	.	.	.	G	G	G																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							G	G	G		S	S											S	S		G	G	G	S
Template Predicted Secondary structure										.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		77	.	.	80	.	.	.	.						.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.																	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
								161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.							.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																										.	.	.	.	.	.																															.
Query SS confidence		.	.	.	.	.	.																										.	.	.	.	.	.																															.
Query Sequence		.	.	.	.	.	.	S	Y	L	Y	A	L	P	Y	N	L	Y	K	E	H	G	I	R	R	Y	G	A	H	G	T	S	.	.	.	.	.	.	H	F	Y	V	T	Q	E	A	A	K	M	L	N	K	P	V	E	E	L	N	I	I	T	C	H	L	G	N	G	G	.	S	V	S	A	I	R	N	G	K	C	V	D
Query Conservation		.	.	.	.	.	.																										.	.	.	.	.	.																															.
Alig confidence		.	.	.	.	.	.														.												.	.	.	.	.	.																															.
Template Conservation																					.
Template Sequence		E	G	E	Q	V	Q	V	X	V	A	A	A	R	Q	E	A	V	A	G	.	V	L	E	A	L	R	G	A	G	L	V	P	V	V	L	D	V	K	P	F	A	G	L	Y	P	L	E	A	R	L	A	E	E	P	D	R	V	F	L	V	L	D	I	G	A	E	S	T	S	L	V	L	L	R	G	D	K	P	L	A
Template Known Secondary structure		T	T	S																	.								T	T													T	T	G	G	G						T	S	T	T										S	S									T	T
Template Predicted Secondary structure																					.
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.		.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure																													.
Query SS confidence																													.
Query Sequence		T	S	M	G	L	T	P	L	E	G	L	V	M	G	T	R	S	G	D	I	D	P	A	I	I	F	H	.	L	H	D	T	L	G	M	S	V	D	A	I	N	K	L	L	T	K	E	S	G	L	L	G	L	T	E	V	T	S	D	C	R	Y	V	E	D	N	Y	A	T	K	E	D	A	K	R	A	M	D	V	Y
Query Conservation																													.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.														.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	R	V	L	T	L	S	G	K	D	F	T	E	A	I	A	R	S	F	N	L	D	L	L	A	A	E	E	V	K	R	T	Y	G	R	I	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	A	I	R	P	V	L	V	E	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.					S		S												T	T													T					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.																				.	.	.	.	.	.	.	260	.	.
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure
Query SS confidence
Query Sequence		C	H	R	L	A	K	Y	I	G	A	Y	T	A	L	M	D	G	R	L	D	A	V	V	F	T	G	G	I	G	E	N	A	A	M	V	R	E	L	S	L	G	K	L	G
Query Conservation
Alig confidence																			.	.									.
Template Conservation																			.	.									.
Template Sequence		T	Q	E	L	R	R	S	L	E	F	F	R	I	Q	L	S	P	.	.	E	V	G	Y	L	L	G	G	.	G	S	K	L	R	G	L	A	S	L	L	T	D	T	L	G
Template Known Secondary structure																			.	.	S						S	G	.	G	G	G	S	T	T										T
Template Predicted Secondary structure																			.	.									.
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.			.	.	.	.	.	310	.	.		.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions