Job Description P0A6A3 Confidence 98.35% Date Thu Jan 5 11:02:41 GMT 2012 Rank 17 Aligned Residues 271 % Identity 13% Template c1z05A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, rok family; PDBTitle: crystal structure of the rok family transcriptional regulator, homolog2 of e.coli mlc protein. Resolution 2.00 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	L	V	L	N	C	G	S	S	S	L	K	F	A	I	I	D	A	V	N	G	E	E	Y	L	S	G	L	A	E	C	F	H	L	P	E	A	R	I	K	W	K	M	D	G	N	K	Q	E	A	A	L	G	A	G	A	A	H	S	E	A	L	N	F	I	V	N	T	I	L	A	Q	K	P	E	L	S	A	Q
Query Conservation
Alig confidence																				.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	F	L	S	M	R	L	G	R	G	Y	L	T	I	A	L	H	E	.	L	G	G	E	V	L	I	D	T	K	I	D	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	E	I	D	Q	D	D	V	L	A	R	L	L	F	E	I	E	E	F	F	Q	T	Y	A	A	Q	L	D	R
Template Known Secondary structure										T	T									.	T	T	S											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				B																			T	T	T	T
Template Predicted Secondary structure																				.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.		.	.	.	.	.	.	.	110	.	.	.	.	.																				.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	A	I	G	H	R	I	V	H	G	G	E	K	Y	T	S	S	V	V	I	D	E	S	V	I	Q	G	I	K	D	A	A	S	F	A	P	L	H	N	P	A	H	L	I	G	I	E	E	A	L	K	S	F	P	Q	L	K	D	K	N	V	A	V	F	D	T	A	F	H	Q	T	M	P	E	E	S	Y	L	Y
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.											.	.	.	.	.																												.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.											.	.	.	.	.																												.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	T	S	I	A	.	.	.	.	.	.	.	.	.	I	T	L	P	G	L	V	N	S	E	.	.	.	.	.	Q	G	I	V	L	Q	M	P	H	Y	N	V	K	N	L	A	L	G	P	E	I	Y	K	A	T	G	L	.	.	.	P	V	F	V	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							.	.	.	.	.	.	.	.	.				S	S				T	T	.	.	.	.	.	T	T						S	S	S	B		S	S	B												S	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.											.	.	.	.	.																												.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		145	.	.	.	.										150	.	.	.	.	.	.	.	.	.						160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.				.	.	.	190	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	P	Y	N	L	Y	K	E	H	G	I	R	R	Y	G	A	H	G	T	S	H	F	Y	V	T	Q	E	A	A	K	M	L	N	K	P	V	E	E	L	N	I	I	T	C	H	L	G	N	G	G	S	V	S	A	I	R	N	G	K	C	V	D	T	S	M	G	L	T	P	L	E	G	L	V	M	G	T	R	S
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	D	T	R	A	W	A	L	A	E	K	L	.	.	.	F	G	H	S	Q	D	V	D	N	S	V	L	I	S	I	H	H	G	L	G	A	G	I	V	L	D	G	R	V	L	Q	G	R	H	G	N	I	G	E	L	G	H	I	Q	I	D	P	Q
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.		S	T	T	T	T		S	S							S	S	S								T	T					T	T	T	T		T	T	B		T	T	S	B			T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.
Template SS confidence
																			192	.	.	.	.	.	.	.	200	.	.	.				.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		245	.	.	.	.	250	.				.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.		.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure									.	.	.																																										.
Query SS confidence									.	.	.																																										.
Query Sequence		G	D	I	D	P	A	I	.	.	.	I	F	H	L	H	D	T	L	G	M	S	V	D	A	I	N	K	L	L	T	K	E	S	G	L	L	G	L	T	E	V	T	S	D	C	R	Y	V	E	D	N	.	Y	A	T	K	E	D	A	K	R	A	M	D	V	Y	C	H	R	L	A	K	Y	I	G	A	Y	T	A	L
Query Conservation									.	.	.																																										.
Alig confidence									.	.	.																																										.
Template Conservation
Template Sequence		G	K	R	C	H	C	G	N	Y	G	C	L	E	T	V	A	S	S	Q	A	I	R	D	Q	V	T	A	R	I	Q	A	G	E	P	S	C	L	A	T	V	E	E	I	S	I	E	D	I	C	A	A	A	A	D	G	D	P	L	A	V	D	V	I	Q	Q	L	G	R	Y	L	G	A	A	I	A	I	V	I	N	L
Template Known Secondary structure				B		T	T	S		B	S	B	T					S														T	T				T	T	T	T		S	S												T	T
Template Predicted Secondary structure
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure
Query SS confidence
Query Sequence		M	D	G	R	L	D	A	V	V	F	T	G	G	I	G	E	N	A	A	M	V	R	E	L	S	L	G	K	L	G
Query Conservation
Alig confidence				.	.
Template Conservation				.	.
Template Sequence		F	N	.	.	P	E	K	I	L	I	G	G	V	I	N	Q	A	K	S	I	L	Y	P	S	I	E	Q	C	I	R
Template Known Secondary structure				.	.		S						S	G	G	G	G	G
Template Predicted Secondary structure				.	.
Template SS confidence
		332	.			.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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