Job Description P0ACN7 Confidence 95.88% Date Thu Jan 5 11:18:37 GMT 2012 Rank 104 Aligned Residues 205 % Identity 10% Template c3h5lB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:putative branched-chain amino acid abc PDBTitle: crystal structure of a putative branched-chain amino acid2 abc transporter from silicibacter pomeroyi Resolution 1.70 Å

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		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.			80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.										.	.	.	.	100	.	.	.	.	.	.	.	.		.	110	.	.	.	.	.	.	.	.	.	120	.	.		.	.	.	.	.	.		.
Predicted Secondary structure																		.	.																	.	.	.	.	.	.	.	.	.														.															.							.
Query SS confidence																		.	.																	.	.	.	.	.	.	.	.	.														.															.							.
Query Sequence		R	N	E	S	R	T	I	L	V	I	V	P	D	I	C	D	.	.	P	F	F	S	E	I	I	R	G	I	E	V	T	A	A	N	.	.	.	.	.	.	.	.	.	H	G	Y	L	V	L	I	G	D	C	A	H	Q	.	N	Q	Q	E	K	T	F	I	D	L	I	I	T	K	.	Q	I	D	G	M	L	.	L
Query Conservation																		.	.																	.	.	.	.	.	.	.	.	.														.															.							.
Alig confidence																		.	.																	.	.	.	.	.	.	.	.	.														.															.							.
Template Conservation
Template Sequence		S	S	D	P	V	V	I	G	C	P	A	P	L	T	G	I	V	A	A	D	G	I	E	F	Q	R	G	I	Q	M	A	A	D	E	I	N	A	V	G	G	I	L	G	R	P	I	E	L	V	F	A	D	T	Q	S	K	G	V	D	V	V	I	Q	S	A	Q	R	L	I	D	R	D	N	A	S	A	L	I	A	G
Template Known Secondary structure			S	S											S	S	T	T																					T	T	T	B	T	T	B										T	T																T	T			S					S
Template Predicted Secondary structure
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.												.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.									.	.	.	.	.	.	.	190
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.
Query Sequence		L	G	S	R	L	P	F	D	A	S	I	E	E	Q	R	N	L	P	P	M	V	M	A	N	.	.	.	.	.	.	.	.	.	.	.	E	F	A	P	E	L	E	L	P	T	V	H	I	D	N	L	T	A	A	F	D	A	V	N	Y	L	Y	E	Q	.	.	.	.	.	.	.	.	G	H	K	R	I	G	C	I
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	N	L	E	N	G	T	A	L	H	D	V	A	A	D	A	G	V	I	A	M	H	A	N	T	V	A	V	H	D	E	M	V	K	S	D	P	D	R	Y	W	G	T	F	Q	Y	D	P	P	E	T	L	Y	G	G	G	F	L	K	F	L	K	D	I	E	D	N	G	E	F	S	R	P	N	N	K	I	A	I	I
Template Known Secondary structure				S	S		S											T																				T	T	T		T	T				S	S			T																	T	T	S				S	S	S
Template Predicted Secondary structure
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	P	E	E	M	P	L	C	H	Y	R	L	Q	G	Y	V	Q	A	L	R	R	C	G	I	M	V	D	P	Q	Y	I	A	R	G	D	F	T	F	E	A	G	S	K	A	M	Q	Q	L	L	D	L	P	Q	P	P	T	A	V	F	C	H	S	D	V	M	A	L	G	A	L	S	Q	A	K	R	Q	G	L	K
Query Conservation
Alig confidence			.	.																										.	.
Template Conservation			.	.																										.	.
Template Sequence		T	.	.	G	P	G	I	Y	S	V	N	I	A	N	A	I	R	D	G	A	G	E	Y	G	Y	D	V	S	.	.	L	F	E	T	V	A	I	P	V	S	D	W	G	P	T	L	A	K	L	R	A	D	P	P	A	V	I	V	V	T	H	F	Y	P	Q	D	Q	A	L	F	M	N	Q	F	M	T	D	P	T	N
Template Known Secondary structure			.	.		S	S														G	G	G	G	T					.	.							S	S		S												S			S																				T	T	S			S
Template Predicted Secondary structure			.	.																										.	.
Template SS confidence
		199			200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.			.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
		271	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		275	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions