Job Description P0ACN7 Confidence 99.96% Date Thu Jan 5 11:18:37 GMT 2012 Rank 60 Aligned Residues 266 % Identity 12% Template c3gbvB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:putative laci-family transcriptional regulator; PDBTitle: crystal structure of a putative laci transcriptional regulator from2 bacteroides fragilis Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		66	.	.	.	70	.	.	.	.	.	.		.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.					100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.			.	.	.	.	.	.	.
Predicted Secondary structure													.																								.	.	.	.																																	.	.
Query SS confidence													.																								.	.	.	.																																	.	.
Query Sequence		E	S	R	T	I	L	V	I	V	P	D	.	I	C	D	P	F	F	S	E	I	I	R	G	I	E	V	T	A	A	N	H	G	Y	L	.	.	.	.	V	L	I	G	D	C	A	H	Q	N	Q	Q	E	K	T	F	I	D	L	I	I	T	K	Q	I	D	G	M	L	L	L	G	.	.	S	R	L	P	F	D	A
Query Conservation													.																								.	.	.	.																																	.	.
Alig confidence													.																								.	.	.	.																																	.	.
Template Conservation
Template Sequence		K	K	Y	T	F	A	C	L	L	P	K	H	L	E	G	E	Y	W	T	D	V	Q	K	G	I	R	E	A	V	T	T	Y	S	D	F	N	I	S	A	N	I	T	H	Y	D	P	Y	D	Y	N	S	F	V	A	T	S	Q	A	V	I	E	E	Q	P	D	G	V	X	F	A	P	T	V	P	Q	Y	T	K	G	F
Template Known Secondary structure															T	T	S																T	G	G	G											T	T																		S								S
Template Predicted Secondary structure
Template SS confidence
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160		.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.							.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure																								.																											.	.	.	.	.	.
Query SS confidence																								.																											.	.	.	.	.	.
Query Sequence		S	I	E	E	Q	R	N	L	P	P	M	V	M	A	N	E	F	A	P	E	L	E	.	L	P	T	V	H	I	D	N	L	T	A	A	F	D	A	V	N	Y	L	Y	E	Q	G	H	K	R	.	.	.	.	.	.	I	G	C	I	A	G	P	E	E	M	P	L	C	H	Y	R	L	Q	G	Y	V	Q	A	L	R
Query Conservation																								.																											.	.	.	.	.	.
Alig confidence																								.																											.	.	.	.	.	.
Template Conservation
Template Sequence		T	D	A	L	N	E	L	G	I	P	Y	I	Y	I	D	S	Q	I	K	D	A	P	P	L	A	F	F	G	Q	N	S	H	Q	S	G	Y	F	A	A	R	X	L	X	L	L	A	V	N	D	R	E	I	V	I	F	R	K	I	H	E	G	V	I	G	S	N	Q	Q	E	S	R	E	I	G	F	R	Q	Y	X	Q
Template Known Secondary structure									T							S	S			T	T	S			S																						S	T	T		S									B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		R	C	G	I	M	V	D	P	Q	Y	I	A	R	G	D	F	T	F	E	A	G	S	K	A	M	Q	Q	L	L	D	L	P	Q	P	P	T	A	V	F	C	H	S	D	V	M	A	L	G	A	L	S	Q	A	K	R	Q	G	L	K	V	P	E	D	L	S	I	I	G	F	D	N	I	D	L	T	Q	F	C	.	.
Query Conservation																																																																																.	.
Alig confidence									.	.																																														.	.	.	.																					.	.
Template Conservation									.	.																																														.	.	.	.
Template Sequence		E	H	H	P	A	C	N	.	.	I	L	E	L	N	L	H	A	D	L	E	D	S	R	X	L	D	D	F	F	R	E	H	P	D	V	K	H	G	I	T	F	N	S	K	V	Y	I	I	G	E	Y	L	Q	Q	.	.	.	.	R	R	K	S	D	F	S	L	I	G	Y	D	L	L	E	R	N	V	T	C	L	K
Template Known Secondary structure					T	T	S		.	.								T	T															T	T							S	S	S		T										.	.	.	.	T	T			S							S
Template Predicted Secondary structure									.	.																																														.	.	.	.
Template SS confidence
		224	.	.	.	.	.	230			.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.					.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
			290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	D	P	P	L	T	T	I	A	Q	P	R	Y	E	I	G	R	E	A	M	L	L	L	L	D	Q	M	Q	G	Q	H	V	G	S	G	S	R	L	M	D	C	E	L	I	I	R	G	S	T
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		E	G	T	V	S	F	L	I	A	Q	Q	P	E	L	Q	G	F	N	S	I	K	T	L	C	D	H	L	I	F	R	K	E	V	A	C	T	N	Y	X	P	I	D	L	L	T	K	E	N	I
Template Known Secondary structure			T	S																									T	S						S											T	T	T	G
Template Predicted Secondary structure
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions