Job Description P0ACN7 Confidence 97.39% Date Thu Jan 5 11:18:37 GMT 2012 Rank 91 Aligned Residues 205 % Identity 13% Template c3eafA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:abc transporter, substrate binding protein; PDBTitle: crystal structure of abc transporter, substrate binding protein2 aeropyrum pernix Resolution 2.00 Å

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		67	.	.	70	.	.	.	.	.	.	.	.	.			80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.														.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.		.	.	.	.	.	.	.	130
Predicted Secondary structure															.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Query SS confidence															.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Query Sequence		S	R	T	I	L	V	I	V	P	D	I	C	D	.	.	P	F	F	S	E	I	I	R	G	I	E	V	T	A	A	N	H	G	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	L	V	L	I	G	D	C	A	H	Q	N	Q	Q	E	K	T	F	I	D	L	I	I	T	K	.	Q	I	D	G	M	L	L	L
Query Conservation															.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Alig confidence															.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Template Conservation
Template Sequence		T	I	N	V	G	L	L	V	D	E	T	G	P	T	S	D	V	G	K	G	Y	S	L	G	A	E	L	A	F	K	Y	F	N	E	K	G	I	Y	T	K	D	G	V	R	V	N	I	N	Y	I	K	R	D	Y	A	Y	N	P	T	T	A	E	E	Y	Y	R	E	F	R	D	R	Y	G	V	I	A	I	I	G	W
Template Known Secondary structure											S	S	S	T	T																										T	T														T	T															T	T			S
Template Predicted Secondary structure
Template SS confidence
		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.				.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.
Query SS confidence																																		.	.	.
Query Sequence		G	S	R	L	P	F	D	A	S	I	E	E	Q	R	N	L	P	P	M	V	M	A	N	E	F	A	P	E	L	E	L	P	.	.	.	T	V	H	I	D	N	L	T	A	A	F	D	A	V	N	Y	L	Y	E	Q	G	H	K	R	I	G	C	I	A	G	P	E	E	M	P	L	C	H	Y	R	L	Q	G	Y	V
Query Conservation																																		.	.	.
Alig confidence																																		.	.	.
Template Conservation
Template Sequence		G	T	A	D	T	E	K	L	S	D	Q	V	D	T	D	K	I	T	Y	I	S	A	S	Y	S	A	K	L	L	V	K	P	F	N	F	Y	P	A	P	D	Y	S	T	Q	A	C	S	G	L	A	F	L	A	S	E	F	G	Q	G	K	L	A	L	A	Y	D	S	K	V	A	Y	S	R	S	P	I	G	A	I	K
Template Known Secondary structure																	T						S				G	G	G	T	T	S	T	T				S	S																				S									T	T						T	T
Template Predicted Secondary structure
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	L	R	R	C	G	I	M	V	D	P	Q	Y	I	A	R	G	D	F	T	F	E	A	G	S	K	A	M	Q	Q	L	L	D	L	P	Q	P	P	T	A	V	F	C	H	S	D	V	M	A	L	G	A	L	S	Q	A	K	R	Q	G	L	K	V	P
Query Conservation
Alig confidence																																									.
Template Conservation																																									.
Template Sequence		K	A	A	P	S	L	G	L	Q	V	V	G	D	Y	D	L	P	L	R	A	T	E	A	D	A	E	R	I	A	R	E	X	L	A	A	D	P	D	Y	.	V	W	C	G	N	T	I	S	S	C	S	L	L	G	R	A	X	A	K	V	G	L	D	A	F
Template Known Secondary structure				T	G	G	G	T											T	T															T	T			S		.					S																T
Template Predicted Secondary structure																																									.
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.		.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions