Job Description P0ACN7 Confidence 99.97% Date Thu Jan 5 11:18:37 GMT 2012 Rank 55 Aligned Residues 260 % Identity 16% Template c3brsA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:periplasmic binding protein/laci transcriptional regulator; PDBTitle: crystal structure of sugar transporter from clostridium2 phytofermentans Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		69	70	.	.	.	.	.			.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.			.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.			.	.	.	.	.	.	140	.	.
Predicted Secondary structure									.	.																													.	.																															.	.
Query SS confidence									.	.																													.	.																															.	.
Query Sequence		T	I	L	V	I	V	P	.	.	D	I	C	D	P	F	F	S	E	I	I	R	G	I	E	V	T	A	A	N	H	G	Y	L	V	L	I	G	.	.	D	C	A	H	Q	N	Q	Q	E	K	T	F	I	D	L	I	I	T	K	Q	I	D	G	M	L	L	L	G	S	R	.	.	L	P	F	D	A	S	I	E	E
Query Conservation									.	.																													.	.																															.	.
Alig confidence									.	.																													.	.																															.	.
Template Conservation
Template Sequence		Y	M	I	C	I	P	K	V	L	D	D	S	S	D	F	W	S	V	L	V	E	G	A	Q	M	A	A	K	E	Y	E	I	K	L	E	F	M	A	P	E	K	E	E	D	Y	L	V	Q	N	E	L	I	E	E	A	I	K	R	K	P	D	V	I	L	L	A	A	A	D	Y	E	K	T	Y	D	A	A	K	E	I
Template Known Secondary structure								S				S	S	S																		T									S	S	T	T															T			S							S		T	T	T	T					T	T	T
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		143	.	.	.	.	.	.	150	.	.	.	.	.	.		.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.			.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.																										.	.
Query SS confidence																.																										.	.
Query Sequence		Q	R	N	L	P	P	M	V	M	A	N	E	F	A	.	P	E	L	E	L	P	T	V	H	I	D	N	L	T	A	A	F	D	A	V	N	Y	L	Y	E	.	.	Q	G	H	K	R	I	G	C	I	A	G	P	E	E	M	P	L	C	H	Y	R	L	Q	G	Y	V	Q	A	L	R	R	C	G	I	M	V	D	P
Query Conservation																.																										.	.
Alig confidence																.																										.	.																																	.	.
Template Conservation																																																																												.	.
Template Sequence		K	D	A	G	I	K	L	I	V	I	D	S	G	M	K	Q	D	I	A	D	I	T	V	A	T	D	N	I	Q	A	G	I	R	I	G	A	V	T	K	N	L	V	R	K	S	G	K	I	G	V	I	S	F	V	K	N	S	K	T	A	M	D	R	E	E	G	L	K	I	G	L	S	D	D	.	.	S	N	K	I
Template Known Secondary structure		G	G	G	T							S	S			S	S				S																						T	S	S	S								S		T	T	S															G	G	G	.	.	G	G	G
Template Predicted Secondary structure																																																																												.	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160			.	.	.	.
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Y	I	A	R	G	D	F	T	F	E	A	G	S	K	A	M	Q	Q	L	L	D	L	P	Q	P	P	T	A	V	F	C	H	S	D	V	M	A	L	G	A	L	S	Q	A	K	R	Q	G	L	K	V	P	E	D	L	S	I	I	G	F	D	N	I	D	L	T	Q	F	C	D	P	P	L	T	T	I	A	Q	P
Query Conservation
Alig confidence																																																			.	.																		.	.
Template Conservation																																																			.	.																		.	.
Template Sequence		E	A	I	Y	Y	C	D	S	N	Y	D	K	A	Y	D	G	T	V	E	L	L	T	K	Y	P	D	I	S	V	M	V	G	L	N	Q	Y	S	A	T	G	A	A	R	A	I	K	D	M	S	.	.	L	E	A	K	V	K	L	V	C	I	D	S	S	M	E	Q	E	.	.	G	I	F	E	A	M	V	V	Q	K
Template Known Secondary structure								T	T																	T	T							S	S														T	T	.	.		T	T	T	S							S		S				.	.		S
Template Predicted Secondary structure																																																			.	.																		.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.			.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230			.	.	.	.	.	.	.	.	.	240
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Y	E	I	G	R	E	A	M	L	L	L	L	D	Q	M	Q	G	Q	H	V	G	S	G	S	R	L	M	D	C	E	L	I	I	R	G
Query Conservation
Alig confidence																					.
Template Conservation																					.
Template Sequence		P	F	N	I	G	Y	L	G	V	E	K	A	L	K	L	L	K	K	E	.	Y	V	P	K	Q	L	D	S	G	C	A	L	I	T	K	D
Template Known Secondary structure																			T		.				S
Template Predicted Secondary structure																					.
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.		.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions