Job Description P0ACN7 Confidence 99.95% Date Thu Jan 5 11:18:37 GMT 2012 Rank 62 Aligned Residues 264 % Identity 15% Template c2qvcC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:sugar abc transporter, periplasmic sugar-binding PDBTitle: crystal structure of a periplasmic sugar abc transporter2 from thermotoga maritima Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.		.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.			.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																																					.																													.	.
Query SS confidence																																					.																													.	.
Query Sequence		T	I	L	V	I	V	P	D	I	C	D	P	F	F	S	E	I	I	R	G	I	E	V	T	A	A	N	H	G	Y	L	V	L	I	G	.	D	C	A	H	Q	N	Q	Q	E	K	T	F	I	D	L	I	I	T	K	Q	I	D	G	M	L	L	L	G	.	.	S	R	L	P	F	D	A	S	I	E	E	Q	R	N
Query Conservation																																					.																													.	.
Alig confidence							.																														.																													.	.
Template Conservation							.
Template Sequence		T	I	G	V	I	.	G	K	S	V	H	P	Y	W	S	Q	V	E	Q	G	V	K	A	A	G	K	A	L	G	V	D	T	K	F	F	V	P	Q	K	E	D	I	N	A	Q	L	Q	X	L	E	S	F	I	A	E	G	V	N	G	I	A	I	A	P	S	D	P	T	A	V	I	P	T	I	K	K	A	L	E	X
Template Known Secondary structure							.		S		S	S																		T									S	S																T	T		S							S	S	T	T	T	T										T
Template Predicted Secondary structure							.
Template SS confidence
		33	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.		.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.			.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure																				.																				.	.
Query SS confidence																				.																				.	.
Query Sequence		L	P	P	M	V	M	A	N	E	F	A	P	E	L	E	L	P	T	.	V	H	I	D	N	L	T	A	A	F	D	A	V	N	Y	L	Y	E	Q	.	.	G	H	K	R	I	G	C	I	A	G	P	E	E	M	P	L	C	H	Y	R	L	Q	G	Y	V	Q	A	L	R	R	C	G	I	M	V	D	P	Q	Y	I
Query Conservation																				.																				.	.
Alig confidence																				.																				.	.																																					.	.
Template Conservation																																																																														.	.
Template Sequence		G	I	P	V	V	T	L	D	T	D	S	P	D	S	G	R	Y	V	Y	I	G	T	D	N	Y	Q	A	G	Y	T	A	G	L	I	X	K	E	L	L	G	G	K	G	K	V	V	I	G	T	G	S	L	T	A	X	N	S	L	Q	R	I	Q	G	F	K	D	A	I	K	D	S	E	I	E	I	V	.	.	D	I
Template Known Secondary structure		T							S	S			T	T	S			S																						T	T	T									S		S	S	S													T	T	T	T	S						.	.
Template Predicted Secondary structure																																																																														.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.			.	.
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.				.	.	.	.	.	.	.
Predicted Secondary structure																																																																								.	.	.
Query SS confidence																																																																								.	.	.
Query Sequence		A	R	G	D	F	T	F	E	A	G	S	K	A	M	Q	Q	L	L	D	L	P	Q	P	P	T	A	V	F	C	H	S	D	V	M	A	L	G	A	L	S	Q	A	K	R	Q	G	L	K	V	P	E	D	L	S	I	I	G	F	D	N	I	D	L	T	Q	F	C	D	P	P	.	.	.	L	T	T	I	A	Q	P
Query Conservation																																																																								.	.	.
Alig confidence																																																.	.																							.	.	.
Template Conservation																																																.	.
Template Sequence		L	N	D	E	E	D	G	A	R	A	V	S	L	A	E	A	A	L	N	A	H	P	D	L	D	A	F	F	G	V	Y	A	Y	N	G	P	A	Q	A	L	V	V	K	N	A	G	.	.	K	V	G	K	V	K	I	V	C	F	D	T	T	P	D	I	L	Q	Y	V	K	E	G	V	I	Q	A	T	X	G	Q	R
Template Known Secondary structure					T	T																	T	T							S	S	T	T												T	T	.	.		T	T	T	S																	T	T	S
Template Predicted Secondary structure																																																.	.
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.			.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.															.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	Y	E	I	G	R	E	A	M	L	L	L	L	D	Q	M	Q	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	H	V	G	S	G	S	R	L	M	D	C	E	L	I	I	R	G	S	T
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	Y	X	X	G	Y	L	S	V	T	V	L	Y	L	X	N	K	I	G	V	Q	N	T	L	X	X	L	P	K	V	K	V	D	G	K	V	D	Y	V	I	D	T	G	V	D	V	V	T	P	E	N	L
Template Known Secondary structure																			T								T	S						T	T															T	T	T
Template Predicted Secondary structure
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions