Job Description P0ACN7 Confidence 100.00% Date Thu Jan 5 11:18:37 GMT 2012 Rank 43 Aligned Residues 267 % Identity 16% Template c2fn9A_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:ribose abc transporter, periplasmic ribose-binding protein; PDBTitle: thermotoga maritima ribose binding protein unliganded form Resolution 1.40 Å

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		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.			.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																																																																		.	.
Query SS confidence																																																																		.	.
Query Sequence		R	T	I	L	V	I	V	P	D	I	C	D	P	F	F	S	E	I	I	R	G	I	E	V	T	A	A	N	H	G	Y	L	V	L	I	G	D	C	A	H	Q	N	Q	Q	E	K	T	F	I	D	L	I	I	T	K	Q	I	D	G	M	L	L	L	G	.	.	S	R	L	P	F	D	A	S	I	E	E	Q	R	N
Query Conservation																																																																		.	.
Alig confidence																																																																		.	.
Template Conservation
Template Sequence		G	K	M	A	I	V	I	S	T	L	N	N	P	W	F	V	V	L	A	E	T	A	K	Q	R	A	E	Q	L	G	Y	E	A	T	I	F	D	S	Q	N	D	T	A	K	E	S	A	H	F	D	A	I	I	A	A	G	Y	D	A	I	I	F	N	P	T	D	A	D	G	S	I	A	N	V	K	R	A	K	E	A
Template Known Secondary structure									S		S	S	S																	T	T									T	T															T	T		S							S		T	T	T	T										T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160			.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.									.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure																	.	.																											.	.	.	.	.	.	.	.
Query SS confidence																	.	.																											.	.	.	.	.	.	.	.
Query Sequence		L	P	P	M	V	M	A	N	E	F	A	P	E	L	E	.	.	L	P	T	V	H	I	D	N	L	T	A	A	F	D	A	V	N	Y	L	Y	E	Q	G	H	K	R	.	.	.	.	.	.	.	.	I	G	C	I	A	G	P	E	E	M	P	L	C	H	Y	R	L	Q	G	Y	V	Q	A	L	R	R	C	G	I
Query Conservation																	.	.																											.	.	.	.	.	.	.	.
Alig confidence																	.	.																											.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	I	P	V	F	C	V	D	R	G	I	N	A	R	G	L	A	V	A	Q	I	Y	S	D	N	Y	Y	G	G	V	L	A	G	E	Y	F	V	K	F	L	K	E	K	Y	P	D	A	K	E	I	P	Y	A	E	L	L	G	I	L	S	A	Q	P	T	W	D	R	S	N	G	F	H	S	V	V	D	Q	Y	P	E
Template Known Secondary structure		T							S	S			S		S	S	S	S	S																											S	S		S											T	T																T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure																																																																					.
Query SS confidence																																																																					.
Query Sequence		M	V	D	P	Q	Y	I	A	R	G	D	F	T	F	E	A	G	S	K	A	M	Q	Q	L	L	D	L	P	Q	P	P	T	A	V	F	C	H	S	D	V	M	A	L	G	A	L	S	Q	A	K	R	Q	G	L	K	V	P	E	D	L	S	I	I	G	F	D	N	.	I	D	L	T	Q	F	C	D	P	P	L	T
Query Conservation																																																																					.
Alig confidence		.																																																																			.
Template Conservation		.
Template Sequence		.	F	K	M	V	A	Q	Q	S	A	E	F	D	R	D	T	A	Y	K	V	T	E	Q	I	L	Q	A	H	P	E	I	K	A	I	W	C	G	N	D	A	M	A	L	G	A	M	K	A	C	E	A	A	G	R	T	D	I	Y	I	F	G	F	D	G	A	E	D	V	I	N	A	I	K	E	G	K	Q	I	V	A
Template Known Secondary structure		.										T	T																	T	T							S	S														T	T		T	T							B											T	T		S
Template Predicted Secondary structure		.
Template SS confidence
			162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	A	Q	P	R	Y	E	I	G	R	E	A	M	L	L	L	L	D	Q	M	Q	G	Q	H	V	G	S	G	S	R	L	M	D	C	E	L	I	I	R	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	I	M	Q	F	P	K	L	M	A	R	L	A	V	E	W	A	D	Q	Y	L	R	G	E	R	S	F	P	E	I	V	P	V	T	V	E	L	V	T	R	E
Template Known Secondary structure																							T	T						S
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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