 |
Job Description | P64612 | Confidence | 90.77% | Date | Thu Jan 5 12:09:55 GMT 2012 |
Rank | 333 | Aligned Residues | 100 |
% Identity | 17% | Template | c3rc8A_ |
PDB info |
PDB header:hydrolase/rna | Chain: A: PDB Molecule:atp-dependent rna helicase supv3l1, mitochondrial; |
PDBTitle: human mitochondrial helicase suv3 in complex with short rna fragment
|
Resolution | 2.90 Å |
|
 |
  |   |
74 | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
Query Sequence |   |
L | Y | M | W | G | G | V | G | R | G | K | T | W | L | M | D | L | F | Y | Q | S | L | P | G | E | R | K | Q | R | L | H | F | H | R | F | M | L | R | V | H | E | E | L | T | A | L | Q | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
G | Q | T | D | P | L | E | I |
Query Conservation |   |
|
|
|   |
|   |
|
|   |
|
|
|   |
|
|
|   |
|   |   |   |   |   |   |   |   |
|   |
|
|
|
|
|   |
|
|   |   |   |
|   |   |
|   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
| . | . |
Template Conservation |   |
  |   |   |   |
|
|
|
|
|
|
|
|   |   |
|
|   |   |
|   |   |   |   |   | . |   |
|   |   |   |
|   |
|   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |
|   |
|   |
| . | . |
Template Sequence |   |
I | F | H | S | G | P | T | N | S | G | K | T | Y | H | A | I | Q | K | Y | F | S | A | K | S | . |
G | V | Y | C | G | P | L | K | L | L | A | H | E | I | F | E | K | S | N | A | A | G | V | P | C | D | L | V | T | G | E | E | R | V | T | V | Q | P | N | G | K | Q | A | S | H | V | S | C | T | V | E | M | C | . |
. |
Template Known Secondary structure |   |
 |  |  |  |
| S | S | S | S | S | T | T |  |  |  |  |  |  |  |  |  | S | S | S | . |  |  |  |  |  | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |
| S | S |
|  |  |
|
| S | S | S | S |
|
|
| S |  |  |  |  |  | G | G | G |
| . | . |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
| . |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |
|  |  |  |  | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
203 | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | |
. | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | |
|
  |
  |   |
129 | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | |
. | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
| . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | A | D | R | F | K | A | E | T | D | V | L | C | F | D | E | F | F | V | S | . |
D | I | T | D | A | M | L | L | G | G | L | M | K | A | L | F | A | R | G | I | T | L | V | A | T | S | N | I | P | P | D |
Query Conservation |   |
  |
|   |   |   |   |   |   |   |   |
|
|
|   |
|
|
|   |
|   | . |
|
|
|
|
|
|
|
|   |   |
|
|   |   |
|   |   |   |
|
|   |
|
|   |
|
|
|   |   |
|   |
Alig confidence |   |
. | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. | . | . |   |   |   |   |   |   |   |   |
|
|
|
|
|   |
|   |   |   |
|   |   |
|
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|
|   |   |   |
Template Sequence |   |
. |
. |
. |
S | V | T | T | P | Y | E | V | A | V | I | D | E | I | Q | M | I | R | D | P | A | R | G | W | A | W | T | R | A | L | L | G | L | C | A | E | E | V | H | L | C | G | E | P | A | A | I | D | L |
Template Known Secondary structure |   |
. | . | . |
| S | S | S |  |  |  |  |  |  |  |  |
| G | G | G | G | G |
| T | T | T |  |  |  |  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |
| G | G | G |  |  |  |
Template Predicted Secondary structure |   |
. | . | . |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
|
|
280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|