Job Description P64612 Confidence 99.10% Date Thu Jan 5 12:09:55 GMT 2012 Rank 14 Aligned Residues 105 % Identity 15% Template c3eihB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:vacuolar protein sorting-associated protein 4; PDBTitle: crystal structure of s.cerevisiae vps4 in the presence of atpgammas Resolution 3.25 Å

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		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.			.	140	.	.
Predicted Secondary structure																																																																												.	.
Query SS confidence																																																																												.	.
Query Sequence		D	T	K	H	T	P	V	R	G	L	Y	M	W	G	G	V	G	R	G	K	T	W	L	M	D	L	F	Y	Q	S	L	P	G	E	R	K	Q	R	L	H	F	H	R	F	M	L	R	V	H	E	E	L	T	A	L	Q	G	Q	T	D	P	L	E	I	I	A	D	R	F	K	A	E	T	D	.	.	V	L	C	F
Query Conservation																																																																												.	.
Alig confidence																																							.	.	.	.	.	.	.	.																														.	.
Template Conservation																																							.	.	.	.	.	.	.	.
Template Sequence		K	G	N	R	K	P	T	S	G	I	L	L	Y	G	P	P	G	T	G	K	S	Y	L	A	K	A	V	A	T	E	A	N	S	T	F	F	S	.	.	.	.	.	.	.	.	V	S	S	S	D	L	V	S	K	W	M	G	E	S	E	K	L	V	K	Q	L	F	A	M	A	R	E	N	K	P	S	I	I	F	I
Template Known Secondary structure			T	T												S	T	T	S												T	T	T						.	.	.	.	.	.	.	.							T	T	T	S	S	S	S		T	T	T										T	T	S	S
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.									.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		143	.	.	.	.									.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.						.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.																		.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.																		.	.	.	.	.
Query Sequence		D	E	F	F	V	.	.	.	.	.	.	.	.	S	D	I	T	D	A	M	L	L	G	G	L	M	K	A	L	F	.	.	.	.	.	A	R	G	I	T	L	V	A	T	S	N	I	P
Query Conservation							.	.	.	.	.	.	.	.																		.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.																		.	.	.	.	.
Template Conservation
Template Sequence		D	Q	V	D	A	L	T	G	T	R	G	E	G	E	S	E	A	S	R	R	I	K	T	E	L	L	V	Q	M	N	G	V	G	N	D	S	Q	G	V	L	V	L	G	A	T	N	I	P
Template Known Secondary structure			S	G	G	G	G					S	S	S	S	S	S	S	S	S	T	T								T	T	S	T	T	T	T	S		S								S
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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