Job Description P64612 Confidence 99.57% Date Thu Jan 5 12:09:55 GMT 2012 Rank 5 Aligned Residues 142 % Identity 20% Template c3cf1C_ PDB info PDB header:transport protein Chain: C: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: structure of p97/vcp in complex with adp/adp.alfx Resolution 4.40 Å

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		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.			.	140	.
Predicted Secondary structure																																																																													.	.
Query SS confidence																																																																													.	.
Query Sequence		E	D	T	K	H	T	P	V	R	G	L	Y	M	W	G	G	V	G	R	G	K	T	W	L	M	D	L	F	Y	Q	S	L	P	G	E	R	K	Q	R	L	H	F	H	R	F	M	L	R	V	H	E	E	L	T	A	L	Q	G	Q	T	D	P	L	E	I	I	A	D	R	F	K	A	E	T	D	.	.	V	L	C
Query Conservation																																																																													.	.
Alig confidence																																								.	.	.	.	.	.	.	.																														.	.
Template Conservation																																								.	.	.	.	.	.	.	.
Template Sequence		L	K	F	G	M	T	P	S	K	G	V	L	F	Y	G	P	P	G	C	G	K	T	L	L	A	K	A	I	A	N	E	C	Q	A	N	F	I	S	.	.	.	.	.	.	.	.	I	K	G	P	E	L	L	T	M	W	F	G	E	S	E	A	N	V	R	E	I	F	D	K	A	R	Q	A	A	P	C	V	L	F
Template Known Secondary structure			T	S						S								T	T	S													T	T						.	.	.	.	.	.	.	.											T	T	T		T							T	T	T	T	T	T	T		S
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.
Template SS confidence
		504	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.									.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.
		142	.	.	.	.	.												.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.					.	.	.	.	.	170	.	.	.	.	.	.	.					.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.							.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.														.	.	.	.																	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.														.	.	.	.																	.	.	.	.	.	.
Query Sequence		F	D	E	F	F	V	.	.	.	.	.	.	.	.	.	.	.	S	D	I	T	D	A	M	L	L	G	G	L	M	K	A	L	F	.	.	.	.	A	R	G	I	T	L	V	A	T	S	N	I	P	.	.	.	.	P	D	E	L	Y	R	N	G	L	Q	R	A	R	F	L	P	.	.	.	.	.	.	A	I	D
Query Conservation								.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.														.	.	.	.																	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.														.	.	.	.																	.	.	.	.	.	.
Template Conservation
Template Sequence		F	D	E	L	D	S	I	A	K	A	R	G	G	N	I	G	D	G	G	G	A	A	D	R	V	I	N	Q	I	L	T	E	M	D	G	M	S	T	K	K	N	V	F	I	I	G	A	T	N	R	P	D	I	I	D	P	A	I	L	R	P	G	R	L	D	Q	L	I	Y	I	P	L	P	D	E	K	S	R	V	A
Template Known Secondary structure			S	S	G	G	G	G					T	T	T	T		S	S			S														S	S		T	T	S	S								S		G	G	G			G	G	G	T	S	T	T	T	S											T	T
Template Predicted Secondary structure
Template SS confidence
		576	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	K	Q	H	C	D	V	M	N	V	D	A	G	V	D	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	L	K	A	N	L	R	K	S	P	V	A	K	D	V	D	L
Template Known Secondary structure							T	T	T	S		B		S	S
Template Predicted Secondary structure
Template SS confidence
		656	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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