Job Description P64612 Confidence 92.87% Date Thu Jan 5 12:09:55 GMT 2012 Rank 272 Aligned Residues 163 % Identity 19% Template c3b9qA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:chloroplast srp receptor homolog, alpha subunit PDBTitle: the crystal structure of cpftsy from arabidopsis thaliana Resolution 1.75 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.			.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.				.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																											.	.																														.	.	.
Query SS confidence																											.	.																														.	.	.
Query Sequence		H	Q	P	D	D	V	Q	K	E	A	V	S	R	L	E	I	I	Y	Q	E	L	I	N	S	T	.	.	P	P	A	P	R	T	S	G	L	M	A	R	V	G	K	L	W	G	K	R	E	D	T	K	H	T	P	V	R	.	.	.	G	L	Y	M	W	G	G	V	G	R	G	K	T	W	L	M	D	L	F	Y	Q
Query Conservation																											.	.																														.	.	.
Alig confidence																											.	.																														.	.	.
Template Conservation
Template Sequence		L	V	S	D	F	G	P	K	I	T	V	R	I	V	E	R	L	R	E	D	I	M	S	G	K	L	K	S	G	S	E	I	K	D	A	L	K	E	S	V	L	E	M	L	A	K	S	K	T	E	L	Q	L	G	F	R	K	P	A	V	I	M	I	V	G	V	N	G	G	G	K	T	T	S	L	G	K	L	A	H
Template Known Secondary structure				T	T																			T	T	S			S																						S					S	S	S										T	T	S
Template Predicted Secondary structure
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		94	.	.	.	.	.	100	.										.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120				.	.	.	.	.	.	.	.	.	130	.	.	.	.					.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.																				.	.	.															.	.	.	.																						.	.
Query SS confidence										.	.	.	.	.	.	.	.	.																				.	.	.															.	.	.	.																						.	.
Query Sequence		S	L	P	G	E	R	K	Q	.	.	.	.	.	.	.	.	.	R	L	H	F	H	R	F	M	L	R	V	H	E	E	L	T	A	L	Q	.	.	.	G	Q	T	D	P	L	E	I	I	A	D	R	F	K	.	.	.	.	A	E	T	D	V	L	C	F	D	E	F	F	V	S	D	I	T	D	A	M	L	.	.
Query Conservation										.	.	.	.	.	.	.	.	.																				.	.	.															.	.	.	.																						.	.
Alig confidence										.	.	.	.	.	.	.	.	.																				.	.	.															.	.	.	.																						.	.
Template Conservation
Template Sequence		R	L	K	N	E	G	T	K	V	L	M	A	A	G	D	T	F	R	A	A	A	S	D	Q	L	E	I	W	A	E	R	T	G	C	E	I	V	V	A	E	K	A	K	A	A	T	V	L	S	K	A	V	K	R	G	K	E	E	G	Y	D	V	V	L	C	D	T	S	G	R	L	H	T	N	Y	S	L	M	E	E
Template Known Secondary structure						T	T											S																T																									T	T		S										S	S
Template Predicted Secondary structure
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.							.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure														.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.
Query Sequence		L	G	G	L	M	K	A	L	F	A	R	G	.	.	.	.	.	.	I	T	L	V	A	T	S	N	I	P	P	D	E	L
Query Conservation														.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.
Template Conservation
Template Sequence		L	I	A	C	K	K	A	V	G	K	I	V	S	G	A	P	N	E	I	L	L	V	L	D	G	N	T	G	L	N	M	L
Template Known Secondary structure											T	T	S	T	T			S								G	G	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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