Job Description P64612 Confidence 99.77% Date Thu Jan 5 12:09:55 GMT 2012 Rank 2 Aligned Residues 245 % Identity 15% Template c2hcbC_ PDB info PDB header:replication Chain: C: PDB Molecule:chromosomal replication initiator protein dnaa; PDBTitle: structure of amppcp-bound dnaa from aquifex aeolicus Resolution 3.51 Å

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		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.			.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure																																	.	.
Query SS confidence																																	.	.
Query Sequence		D	T	K	H	T	P	V	R	G	L	Y	M	W	G	G	V	G	R	G	K	T	W	L	M	D	L	F	Y	Q	S	L	.	.	P	G	E	R	K	Q	R	L	H	F	H	R	F	M	L	R	V	H	E	E	L	T	A	L	Q	G	Q	T	D	P	L	E	I	I	A	D	R	F	K	A	E	T	D	V	L	C	F
Query Conservation																																	.	.
Alig confidence																																	.	.																											.	.	.	.	.	.
Template Conservation																																																													.	.	.	.	.	.
Template Sequence		E	N	L	G	S	L	Y	N	P	I	F	I	Y	G	S	V	G	T	G	K	T	H	L	L	Q	A	A	G	N	E	A	K	K	R	G	Y	R	V	I	Y	S	S	A	D	D	F	A	Q	A	M	V	E	H	L	K	K	G	T	I	.	.	.	.	.	.	N	E	F	R	N	M	Y	K	S	V	D	L	L	L	L
Template Known Secondary structure		T	T	T	T	T	S									S	S	S	S	S															T	T																						T			.	.	.	.	.	.									T		S
Template Predicted Secondary structure																																																													.	.	.	.	.	.
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.							.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		143	.	.	.	.	.	.	150	.	.	.	.			.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure														.	.																																																														.	.	.	.	.
Query SS confidence														.	.																																																														.	.	.	.	.
Query Sequence		D	E	F	F	V	S	D	I	T	D	A	M	.	.	L	L	G	G	L	M	K	A	L	F	A	R	G	I	T	L	V	A	T	S	N	I	P	P	D	E	L	Y	R	N	G	L	Q	R	A	R	F	L	P	A	I	D	A	I	K	Q	H	C	D	V	M	N	V	D	A	G	V	D	Y	R	L	.	.	.	.	.
Query Conservation														.	.																																																														.	.	.	.	.
Alig confidence														.	.																												.	.	.	.	.	.	.																												.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.
Template Sequence		D	D	V	Q	F	L	S	G	K	E	R	T	Q	I	E	F	F	H	I	F	N	T	L	Y	L	L	E	K	Q	I	I	L	A	S	D	R	H	P	Q	K	L	.	.	.	.	.	.	.	D	G	V	S	D	R	L	V	S	R	F	E	G	G	I	L	V	E	I	E	L	D	N	K	T	R	F	K	I	I	K	E
Template Known Secondary structure				G	G	G	G	T	T		S																T	T								S	S		G	G	G		.	.	.	.	.	.	.	T	T	S											S									S
Template Predicted Secondary structure																																											.	.	.	.	.	.	.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220								.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
																																		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	T	L	T	Q	A	H	L	W	L	S	P	L	H	D	E	T	R	A	Q	M	D	K	L	W	L	A	L	A	G	G	K	R	E	N	S	P	T	L	E	I	N	H	R	P	L	A	T
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	L	K	E	F	N	L	E	L	R	K	E	V	I	D	Y	L	L	E	N	T	K	N	V	R	E	I	E	G	K	I	K	L	I	K	L	K	G	F	E	G	L	E	R	K	E	R	K	E	R	D	K	L	M	Q	I	V	E	F	V	A	N	Y	Y	A	V	K	V	E	D	I	L	S	D	K	N	K	R	T	S
Template Known Secondary structure						T	T																	S												T	T	S		S					T						T	T	T	T						T	G	G	G	S	S								S	S					S	S	T
Template Predicted Secondary structure
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.		.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.		.	.	.	.	.	.
Predicted Secondary structure																																		.																													.
Query SS confidence																																		.																													.
Query Sequence		M	G	V	E	N	Q	T	L	A	V	S	F	T	T	L	C	V	D	A	R	S	Q	H	D	Y	I	A	L	S	R	L	F	.	H	T	V	M	L	F	D	V	P	V	M	T	R	L	M	E	S	E	A	R	R	F	I	A	L	V	D	E	.	F	Y	E	R	H	V
Query Conservation																																		.																													.
Alig confidence				.	.														.	.	.	.	.											.																													.
Template Conservation				.	.														.	.	.	.	.
Template Sequence		E	A	.	.	R	K	I	A	M	Y	L	C	R	K	V	C	S	.	.	.	.	.	A	S	L	I	E	I	A	R	A	F	D	H	T	T	V	I	H	A	I	R	S	V	E	E	E	K	K	R	K	F	K	H	L	V	G	F	L	E	K	Q	A	F	D	K	I	C
Template Known Secondary structure		T		.	.											T	S		.	.	.	.	.							T	T															T	T	S																				T
Template Predicted Secondary structure				.	.														.	.	.	.	.
Template SS confidence
		334	.			.	.	.	.	340	.	.	.	.	.	.	.	.						.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions