Return to main results Retrieve Phyre Job Id

Job DescriptionP64612
Confidence99.77%DateThu Jan 5 12:09:55 GMT 2012
Rank2Aligned Residues245
% Identity15%Templatec2hcbC_
PDB info PDB header:replicationChain: C: PDB Molecule:chromosomal replication initiator protein dnaa; PDBTitle: structure of amppcp-bound dnaa from aquifex aeolicus
Resolution3.51 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   65....70.........80.........90..... ....100.........110.........120.........130.........140..
Predicted Secondary structure 














..













Query SS confidence 






























. .














































Query Sequence  DTKHTPVRGLYMWGGVGRGKTWLMDLFYQSL. . PGERKQRLHFHRFMLRVHEELTALQGQTDPLEIIADRFKAETDVLCF
Query Conservation        





 
 

 


 


 
    ..    
 




 

   
  
             
        


 
Alig confidence 






























..

























......














Template Conservation          



 







 

 


                               ......           

 
Template Sequence  ENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTI. . . . . . NEFRNMYKSVDLLLL
Template Known Secondary structure  TTTTTS


SSSSSTT

T

......T
S
Template Predicted Secondary structure 



















......



Template SS confidence 















































































   106...110.........120.........130.........140.........150.........160.... .....170.........
 
   143......150.... .....160.........170.........180.........190.........200.........210.....
Predicted Secondary structure 


..






















.....
Query SS confidence 











. .




























































. . . . .
Query Sequence  DEFFVSDITDAM. . LLGGLMKALFARGITLVATSNIPPDELYRNGLQRARFLPAIDAIKQHCDVMNVDAGVDYRL. . . . .
Query Conservation 


 
 





..

  

  
   

 

 


  
  

  

 
  




  

    
  

   


 .....
Alig confidence 











..


























.......


























.....
Template Conservation 


  
                        

        
.......      
                  
  

  
Template Sequence  DDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKL. . . . . . . DGVSDRLVSRFEGGILVEIELDNKTRFKIIKE
Template Known Secondary structure 
GGGGTT
STT
SS
GGG
.......TTS
S



S
Template Predicted Secondary structure 











.......







Template SS confidence 















































































   180.........190.........200.........210.........220 .........230.........240.........250..
 
   216...220.........230.........240.........250.........260...
Predicted Secondary structure  ................................




















Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .















































Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RTLTQAHLWLSPLHDETRAQMDKLWLALAGGKRENSPTLEINHRPLAT
Query Conservation  ................................        
  
        
   
  
          
 
 

 
 
Alig confidence  ................................















































Template Conservation        
         

      
 
                                                     
Template Sequence  KLKEFNLELRKEVIDYLLENTKNVREIEGKIKLIKLKGFEGLERKERKERDKLMQIVEFVANYYAVKVEDILSDKNKRTS
Template Known Secondary structure  TT





STTS
STTTTT
TGGGSS


SS



SST
Template Predicted Secondary structure 














Template SS confidence 















































































   253......260.........270.........280.........290.........300.........310.........320.........330..
 
   264.....270.........280.........290..... ....300.........310.........320... ......
Predicted Secondary structure 
















.









.



Query SS confidence 































.



























.





Query Sequence  MGVENQTLAVSFTTLCVDARSQHDYIALSRLF. HTVMLFDVPVMTRLMESEARRFIALVDE. FYERHV
Query Conservation        

 
 
 


       


 

  
. 

 
  

 
     
 




 


 .


  
Alig confidence 

..












.....









.



























.





Template Conservation    ..
  
  
      ..... 
   

  






  
 

           
  
   
   
 
Template Sequence  EA. . RKIAMYLCRKVCS. . . . . ASLIEIARAFDHTTVIHAIRSVEEEKKRKFKHLVGFLEKQAFDKIC
Template Known Secondary structure  T..TS
.....

TT



TTS



T
Template Predicted Secondary structure  ..

.....






Template SS confidence 



































































   334. ....340........ .350.........360.........370.........380.........390....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions