Return to main results Retrieve Phyre Job Id

Job DescriptionP64612
Confidence97.47%DateThu Jan 5 12:09:55 GMT 2012
Rank91Aligned Residues104
% Identity24%Templatec1vciA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:sugar-binding transport atp-binding protein; PDBTitle: crystal structure of the atp-binding cassette of multisugar2 transporter from pyrococcus horikoshii ot3 complexed with3 atp
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   76...80.........90......... 100.........110.........
Predicted Secondary structure 










....................................
Query SS confidence 























. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .



















Query Sequence  MWGGVGRGKTWLMDLFYQSLPGER. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . KQRLHFHRFMLRVHEELTAL
Query Conservation 
 
 

 


 


 
        ....................................
 




 

   
  
   
Alig confidence 























....................................



















Template Conservation 
 
 








  
 
   
  
 
   
                        
                    
   
Template Sequence  LLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQHMTVYENIAFPLKKFPKDEIDKRVRWAAELL
Template Known Secondary structure 

TTSSTSS

STT
TTS
GGGTT




TT




T
Template Predicted Secondary structure 




































Template SS confidence 















































































   43......50.........60.........70.........80.........90.........100.........110.........120..
 
   120 .........130.........140.... .....150.........160... ......170.........
Predicted Secondary structure 
.............







.


.






Query SS confidence 
. . . . . . . . . . . . .























.


















.















Query Sequence  Q. . . . . . . . . . . . . GQTDPLEIIADRFKAETDVLCFDE. FFVSDITDAMLLGGLMKAL. FARGITLVATSNIPPD
Query Conservation   .............         
        


 

.
 
 







  

  
.   

 

 


  
 
Alig confidence 
.............























.


















.















Template Conservation              




 


 




   
 






 
 

          
       
 


 


    
Template Sequence  QIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVE
Template Known Secondary structure  T
GGGTT

GGG

SS
TT

SSTTTTS


S
Template Predicted Secondary structure 

























Template SS confidence 










































































   131........140.........150.........160.........170.........180.........190.........200.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions