Job Description P64612 Confidence 98.61% Date Thu Jan 5 12:09:55 GMT 2012 Rank 45 Aligned Residues 153 % Identity 18% Template c1sxjA_ PDB info PDB header:replication Chain: A: PDB Molecule:activator 1 95 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																												.	.	.	.	.	.
Query SS confidence																																																																												.	.	.	.	.	.
Query Sequence		Q	K	E	A	V	S	R	L	E	I	I	Y	Q	E	L	I	N	S	T	P	P	A	P	R	T	S	G	L	M	A	R	V	G	K	L	W	G	K	R	E	D	T	K	H	T	P	V	R	G	L	Y	M	W	G	G	V	G	R	G	K	T	W	L	M	D	L	F	Y	Q	S	L	P	G	E	.	.	.	.	.	.
Query Conservation																																																																												.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	K	G	S	V	M	K	L	K	N	W	L	A	N	.	.	.	.	.	.	.	.	.	.	.	.	.	W	E	N	S	K	K	N	S	F	K	H	A	G	K	D	G	S	G	V	F	R	A	A	M	L	Y	G	P	P	G	I	G	K	T	T	A	A	H	L	V	A	Q	E	L	G	Y	D	I	L	E	Q	N	A
Template Known Secondary structure															T	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T	T					T	T	S	T	T	S		S							S	T	T	S	S												T	T								T
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.														.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
					99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure		.	.	.																																									.
Query SS confidence		.	.	.																																									.
Query Sequence		.	.	.	R	K	Q	R	L	H	F	H	R	F	M	L	R	V	H	E	E	L	T	A	L	Q	G	Q	T	D	P	L	E	I	I	A	D	R	F	K	A	E	T	D	.	V	L	C	F	D	E	F	F	V	S	D	I	T	D	A	M	L	L	G	G	L	M	K	A	L	F	A	R	G	I	T	L	V	A	T	S
Query Conservation		.	.	.																																									.
Alig confidence		.	.	.				.	.	.	.	.	.	.	.																														.
Template Conservation								.	.	.	.	.	.	.	.
Template Sequence		S	D	V	R	S	K	.	.	.	.	.	.	.	.	T	L	L	N	A	G	V	K	N	A	L	D	N	M	S	V	V	G	Y	F	K	H	Q	N	L	N	G	K	H	F	V	I	I	M	D	E	V	D	G	M	S	G	G	D	R	G	G	V	G	Q	L	A	Q	F	C	R	K	T	S	T	P	L	I	L	I	C
Template Known Secondary structure		T	S					.	.	.	.	.	.	.	.						T	G	G	G	G	T	T				S	T	T	T	T	T				S	S	T	T	S							S	G	G	G			T	T	S	T	T													S	S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.
Template SS confidence
		380	.	.	.	.	.									.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	I	P	P	D	E	L	Y	R	N	G	L	Q	R	A	R	F	L	P	A	I	D	A	I	K	Q	H	C	D	V	M	N	V	D	A	G	V
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	E	R	N	L	.	.	.	.	.	.	.	.	.	.	.	.	.	P	K	M	R	P	F	D	R	V	C	L	D	I	Q	F	R	R	P	D
Template Known Secondary structure		S		T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	T	G	G	G	T	T	T	S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		456	.	.	.	460														.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions