Job Description P64612 Confidence 99.27% Date Thu Jan 5 12:09:55 GMT 2012 Rank 8 Aligned Residues 141 % Identity 18% Template c1s3sA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:transitional endoplasmic reticulum atpase (ter PDBTitle: crystal structure of aaa atpase p97/vcp nd1 in complex with2 p47 c Resolution 2.90 Å

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		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	H	T	P	V	R	G	L	Y	M	W	G	G	V	G	R	G	K	T	W	L	M	D	L	F	Y	Q	S	L	P	G	E	R	K	Q	R	L	H	F	H	R	F	M	L	R	V	H	E	E	L	T	A	L	Q	G	Q	T	D	P	L	E	I	I	A	D	R	F	K	A	E	T	D	V	L	C	F	D	E	F	F
Query Conservation
Alig confidence																																		.																		.	.	.	.	.
Template Conservation																																		.																		.	.	.	.	.
Template Sequence		G	V	K	P	P	R	G	I	L	L	Y	G	P	P	G	T	G	K	T	L	I	A	R	A	V	A	N	E	T	G	A	F	.	F	F	L	I	N	G	P	E	I	M	S	K	L	A	G	E	S	.	.	.	.	.	E	S	N	L	R	K	A	F	E	E	A	E	K	N	A	P	A	I	I	F	I	D	E	L	D
Template Known Secondary structure														S	T	T	S	S													T			.											T	S		T	T			.	.	.	.	.														T		S							T	G	G
Template Predicted Secondary structure																																		.																		.	.	.	.	.
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.		.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.						.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
		147									.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.					.	.	.	170	.	.	.	.	.	.	.					.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.							.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.																				.	.	.	.												.	.	.	.																	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.																				.	.	.	.												.	.	.	.																	.	.	.	.	.	.
Query Sequence		V	.	.	.	.	.	.	.	.	S	D	I	T	D	A	M	L	L	G	G	L	M	K	A	L	F	A	R	.	.	.	.	G	I	T	L	V	A	T	S	N	I	P	.	.	.	.	P	D	E	L	Y	R	N	G	L	Q	R	A	R	F	L	P	.	.	.	.	.	.	A	I	D	A	I	K	Q	H	C	D	V
Query Conservation			.	.	.	.	.	.	.	.																				.	.	.	.												.	.	.	.																	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.																				.	.	.	.												.	.	.	.																	.	.	.	.	.	.
Template Conservation
Template Sequence		A	I	A	P	K	R	E	K	T	H	G	E	V	E	R	R	I	V	S	Q	L	L	T	L	M	D	G	L	K	Q	R	A	H	V	I	V	M	A	A	T	N	R	P	N	S	I	D	P	A	L	R	R	F	G	R	F	D	R	E	V	D	I	G	I	P	D	A	T	G	R	L	E	I	L	Q	I	H	T	K	N
Template Known Secondary structure		G	T				S	S	S				T	T																	G	G	G									S		G	G	G	S		G	G	G	T	S	T	T	S	S																					T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
		205	.	.	.	.	210	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	N	V	D	A	G	V	D	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	K	L	A	D	D	V	D	L
Template Known Secondary structure		S				T	T
Template Predicted Secondary structure
Template SS confidence
		388	.	390	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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