Job Description A5PFK0 Confidence 40.09% Date Thu Jan 5 10:55:36 GMT 2012 Rank 289 Aligned Residues 105 % Identity 7% Template c3lkbB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:probable branched-chain amino acid abc PDBTitle: crystal structure of a branched chain amino acid abc2 transporter from thermus thermophilus with bound valine Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.					.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.								.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.																					.	.	.	.	.	.	.
Query SS confidence														.	.	.	.																					.	.	.	.	.	.	.
Query Sequence		M	Q	T	P	H	I	L	I	V	E	D	E	.	.	.	.	L	V	T	R	N	T	L	K	S	I	F	E	A	E	G	Y	D	V	F	E	.	.	.	.	.	.	.	A	T	D	G	A	E	M	H	Q	I	L	S	E	Y	D	I	N	L	V	I	M	D	I	N	L	P	G	K	N	G	L	L	L	A	R	E	L
Query Conservation														.	.	.	.																					.	.	.	.	.	.	.
Alig confidence														.	.	.	.																					.	.	.	.	.	.	.																									.	.
Template Conservation																																																																					.	.
Template Sequence		K	K	G	A	K	V	A	L	V	V	H	P	S	P	F	G	R	A	P	V	E	D	A	R	K	A	A	R	E	L	G	L	Q	I	V	D	V	Q	E	V	G	S	G	N	L	D	N	T	A	L	L	K	R	F	E	Q	A	G	V	E	Y	V	V	H	Q	N	V	.	.	A	G	P	V	A	N	I	L	K	D	A
Template Known Secondary structure		S	T	T									S	S					T	T												T											T	T														T	T								S		.	.
Template Predicted Secondary structure																																																																					.	.
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.			.	.	210	.	.	.	.	.	.	.	.
		70	.		.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		R	E	.	Q	A	N	V	A	L	M	F	L	T	G	R	D	N	E	V	D	K	I	L	G	L	E	I	G	A	D	D	Y	I	T	K	P	F	N	P
Query Conservation				.
Alig confidence				.
Template Conservation
Template Sequence		K	R	L	G	L	K	M	R	H	L	G	A	H	Y	T	G	G	P	D	L	I	A	L	A	G	D	A	A	E	G	F	L	W	A	T	S	F	Y	M
Template Known Secondary structure				T	T									G	G	G		S								G	G	G	G	T	T						S	B
Template Predicted Secondary structure
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions