Job Description A5PFK0 Confidence 23.53% Date Thu Jan 5 10:55:36 GMT 2012 Rank 392 Aligned Residues 97 % Identity 13% Template c3eafA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:abc transporter, substrate binding protein; PDBTitle: crystal structure of abc transporter, substrate binding protein2 aeropyrum pernix Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.					.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.										.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.																					.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.																					.	.	.	.	.	.	.	.	.
Query Sequence		T	P	H	I	L	I	V	E	D	E	L	V	.	.	.	.	T	R	N	T	L	K	S	I	F	E	A	E	G	Y	D	V	F	E	A	T	.	.	.	.	.	.	.	.	.	D	G	A	E	M	H	Q	I	L	S	E	Y	D	I	N	L	V	I	M	D	I	N	L	P	G	K	N	G	L	L	L	A	R	E	L
Query Conservation														.	.	.	.																					.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.																					.	.	.	.	.	.	.	.	.																							.	.
Template Conservation																																																																					.	.
Template Sequence		G	K	L	A	L	A	Y	D	S	K	V	A	Y	S	R	S	P	I	G	A	I	K	K	A	A	P	S	L	G	L	Q	V	V	G	D	Y	D	L	P	L	R	A	T	E	A	D	A	E	R	I	A	R	E	X	L	A	A	D	P	D	Y	V	W	C	G	N	T	.	.	I	S	S	C	S	L	L	G	R	A	X
Template Known Secondary structure										T	T						T	T								T	G	G	G	T											T	T															T	T			S						S		.	.
Template Predicted Secondary structure																																																																					.	.
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.			250	.	.	.	.	.	.	.	.	.	260
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	Q	A	N	V	A	L	M	F	L	T	G	R	D	N	E	V	D	K	I	L	G	L	E	I	G	A	D	D	Y	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	K	V	G	L	D	A	F	L	L	T	N	V	W	G	F	D	E	R	S	P	Q	L	I	G	E	G	G	Y	G	K	V
Template Known Secondary structure					T									G	G	G		S	T	T							G	G	G	T	T	S
Template Predicted Secondary structure
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions