Job Description A5PFK0 Confidence 56.96% Date Thu Jan 5 10:55:36 GMT 2012 Rank 230 Aligned Residues 118 % Identity 9% Template c2q5cA_ PDB info PDB header:transcription Chain: A: PDB Molecule:ntrc family transcriptional regulator; PDBTitle: crystal structure of ntrc family transcriptional regulator from2 clostridium acetobutylicum Resolution 1.49 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.			.	.	.	.	50	.	.																		.	.	.	.	.	.	.	60
Predicted Secondary structure																																	.															.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.															.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	Q	T	P	H	I	L	I	V	E	D	E	L	V	T	R	N	T	L	K	S	I	F	E	A	E	G	Y	D	V	F	.	E	A	T	D	G	A	E	M	H	Q	I	L	S	E	.	.	Y	D	I	N	L	V	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	D	I	N	L	P	G	K
Query Conservation																																	.															.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.																												.															.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.
Template Sequence		L	S	L	.	K	I	A	L	I	S	Q	N	E	N	L	L	N	L	F	P	K	L	A	L	E	K	N	F	I	P	I	T	K	T	A	S	L	T	R	A	S	K	I	A	F	G	L	Q	D	E	V	D	A	I	I	S	R	G	A	T	S	D	Y	I	K	K	S	V	S	I	P	S	I	S	I	K	V	T	R	F
Template Known Secondary structure					.							S																T																					T	T	T		S														T	T		S	S
Template Predicted Secondary structure					.
Template SS confidence
		1	.	.		.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	L	L	L	A	R	E	L	R	E	Q	A	N	V	A	L	M	F	L	T	G	R	D	N	E	V	D	K	I	L	G	L	E	I	G	A	D	D	Y	I	T	K	P	F	N	P	R	E	L	T	I	R	A	R	N	L	L	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	T	M	R	A	V	Y	N	A	K	R	F	G	N	E	L	A	L	I	A	Y	K	H	S	I	V	D	K	H	E	I	E	A	M	L	G	V	K	I	K	E	F	L	F	S	S	E	D	E	I	T	T	L	I	S	K	V	K	T
Template Known Secondary structure											G	G	G		S								S	S		S	S										T										S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions