 |
Job Description | A5PFK0 | Confidence | 93.71% | Date | Thu Jan 5 10:55:36 GMT 2012 |
Rank | 133 | Aligned Residues | 32 |
% Identity | 16% | Template | c2hwvA_ |
PDB info |
PDB header:transcription | Chain: A: PDB Molecule:dna-binding response regulator vicr; |
PDBTitle: crystal structure of an essential response regulator dna binding2 domain, vicrc in enterococcus faecalis, a member of the yycf3 subfamily.
|
Resolution | 1.90 Å |
|
  |   |
137 | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Y | K | F | N | G | W | E | L | D | I | N | S | R | S | L | I | G | P | D | G | E | Q | Y | K | L | P | R | S | E | F | R | A | M |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|   |   |
|   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|   |   |   |   |
|   |   |   |   |   | . |
|   |   |   |   |   |   |
|   |
|
|   |   |
|   |   |
|
|
Template Sequence |   |
M | T | I | G | D | L | T | I | H | P | D | A | Y | M | . |
V | S | K | R | G | E | K | I | E | L | T | H | R | E | F | E | L | L |
Template Known Secondary structure |   |
 |  |  | T | T |  |  |  |
| S | S | S | S |  | . |  |  |  | T | T |  |  |  |  |
|
|  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |
|
|  |  |  |  |
|
|
|
|  | . |  |  |  |
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
134 | . | . | . | . | . | 140 | . | . | . | . | . | . | . | |
. | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|